| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SeD_A0024 |
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| Symbol | |
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| ID | 6871585 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011205 |
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| Strand | + |
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| Start bp | 25805 |
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| End bp | 28426 |
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| Gene Length | 2622 bp |
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| Protein Length | 873 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 642783284 |
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| Product | outer membrane usher protein FimD |
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| Protein accession | YP_002213978 |
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| Protein GI | 198245430 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3188] P pilus assembly protein, porin PapC |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.267854 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 52 |
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| Fosmid unclonability p-value | 0.163844 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGTAATC AGCTTTTCAT GACGCGATAT TACTCCAGCG TAACTAAACC CGTATTAACC
CCGCTGGCGT TGGCTATCGC ATTGGCGCCT GCGCCGGGGT GGGCGGAAAA CTATTTCAAC
CCGGCATTTC TGTCTGACGA CCCGTCTGCG GTGGCCGACC TATCGACCTT TTCCCGTAAT
GCCCAGGCGG CAGGGATGTA TCGCGTTGAC GTTTACCTGA ACAATACGTT TCTCGCGACC
AGAGACATTG CCTTCCAGGC GGTGAAAACG ACGGGAAAAA GCGCGCCCAC CGATGACAGC
GGATTACGCG CCTGCCTGAC GCCTGAAATG CTTAAAAATA TGGGGGTAAA CACCGGGGCG
TTTCCACTGT TGGCGAAGGC GGCGGCGGGA AGTTGCCCTG ATCTCGCCAG TGCGATACCG
GCCGCCCGGA CCCGCTTTGA TTTTGCGCAG CAACGTCTCG ACATTAGCAT CCCGCAGGCG
GCGATGGTTG CCAGCGCCAG AGGCTATATC CCACCGAAAT ACTGGGATGA AGGTATTAAT
GCGTTGCTAT TGAATTACAC CTTTACCGGC GCGAATAGTC AGGATCGGAG CCCAGGCGGC
AGTGCGGAGA ACAGCTATTT TCTTGGATTG AATAGCGGCC TTAATCTGGG GGCCTGGCGG
TTACGCGACT ACTCCACATG GAACGCGAAT AGCGGCGATC AGAATAGCGA CAGCGACTGG
CAGCACATCA GTACTTATCT GGAACGTGAT GTGGTCTTTT TGCAGGGAGA ACTGACGGCA
GGCGATAGTT ATACCCCCTC CGCATTATTC GACAGCCTTC CTTTTCGTGG GCTACAACTG
GCGTCTGACG ACAATATGTT GCCAGACAGC ATGAAGGGCT TCGCACCGAC CATTCACGGC
ATTGCCAGAA GCAACGCGCA AGTGACCATT CGGCAAAACG GCTACATCAT TAATCAGCGC
TATGTGCCGC CCGGGGCATT TACTATTAAT GATCTCTATC CTACCGCCGC CAGCGGCGAT
TTGACTGTGG AAGTCAAAGA GTCCGACGGT TCTATTAATC GCTATAACGT GCCCTATTCC
GCCGTGCCGA TTCTACAACG AGAAGGGCGG CTGAAGTATG CGGCGACGGT GGCGGAGTAT
CGTAGCGAGA GTAGTCAAAA AGAGAAGGTG AAATTCAGTC AGGCGACCTT GATATGGGGG
TTACCGCATG GTTTTACGCT GTATGGCGGA ACACAACTTT CCAGTCATTA TCACGCGCTG
GCGATCGGCA GCGGCGCAAA TCTGGGCGAC TGGGGCGCGG TGTCGCTGGA TGTCACCCAG
GCTACCAGTA CGCTGGCGGA TAATAACACC TACCAGGGGC AATCGCTGCG TTTCCTGTAT
GCCAAATCGC TTGCACAGTC AGGAACCAAT TTACAGCTTA TGGGCTATCG CTATTCAACC
TCGGGCTTTT ACACGTTGGA TGATACCACG TGGAAACGGA TGAGCGGCTA TGACGATGAC
AGTCGGACTG ACAGCGATAA AAGCAGGCCG GAATGGGCGG ATTATTACAA CCTTTATTAC
ACCAGGAGGG GGAAAGTACA ACTCGATATC AATCAACAGC TAGGCGGGTT GGGATCGCTT
TTTATTACCG GCAGCCAGCA AAGTTACTGG CACACTGATG AAAAGGATTC TTTGTTGCAG
GTGGGATACA GCGATACGCT GGCGGGTATT GCATGGAGCG TTTCTTACAA CAATAACAAA
TCCGCAGGCG ATGCGGAGCG CGATCAAATT TTCGCGCTGA ATATCTCGGT GCCGCTAAGT
CAATGGCTGC AACACGATGA TGAGGTCACG CGCCATCACA ATGTTTACGC TACCTTTAGC
ACCAGTACGG ACAAACAGCA TAACGTTACG CAGAATGCGG GCCTTAGCGG CACACTGCTG
GACGAAAACA ATCTTAGTTA CAACATACAG CAAGGTTATC AGAATCACGG TATTGGCGAA
AGCGGCGCCG CCAGTCTGGA ATACGATGGC GCGAAAGGCA ACGCCAACAT TGGCTATAAC
GTTAGCGATA ACGGCGATTA CCAGCAGGTG AATTATGGCC TGAGCGGCGG CCTGGTGGCG
CACGCGCATG GAGTGACACT AAGCCAGCCG CTGGGCAATA CCAATATTTT GATTGCCGCG
CCGGGCGCAG CCAACGTCGG CGTTGTCGAC CAGCCGGGTA TTCATACGGA CGCGCGTGGC
TATGCGGTGG TGCCGTATGC GACAACATAT CGCCAAAACC GTATGGCGCT GGACGTTAAC
GCCATGGCTG ATGATGTCGA TATTGATGAC GCGGTGACTC GCGTTGTGCC GACCGAAGGC
GCGCTGGTTC TGGCCCGCTT TAAAGCGCGG GTCGGCGCGC GTGCCCTGGT AACGCTGAAT
CATAACGGTA AGCCTGTACC CTTTGGCGCA ACGGTGACGG TGAATGATCG CCATGCGGAG
GCGATTGTTG ACGAGGCCGG GGAAGTCTAT CTTTCCGGGT TGTCAGCGCA AGGCGTTCTG
CACGTTCGCT GGGGGAACCT GCCGGATCAA CAGTGTGTCG CGTCCTATCA TCTCTCTTCC
TCCCGTCAGA TTCTGAGCCG ACAACATGCG GAGTGTCATT AA
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| Protein sequence | MRNQLFMTRY YSSVTKPVLT PLALAIALAP APGWAENYFN PAFLSDDPSA VADLSTFSRN
AQAAGMYRVD VYLNNTFLAT RDIAFQAVKT TGKSAPTDDS GLRACLTPEM LKNMGVNTGA
FPLLAKAAAG SCPDLASAIP AARTRFDFAQ QRLDISIPQA AMVASARGYI PPKYWDEGIN
ALLLNYTFTG ANSQDRSPGG SAENSYFLGL NSGLNLGAWR LRDYSTWNAN SGDQNSDSDW
QHISTYLERD VVFLQGELTA GDSYTPSALF DSLPFRGLQL ASDDNMLPDS MKGFAPTIHG
IARSNAQVTI RQNGYIINQR YVPPGAFTIN DLYPTAASGD LTVEVKESDG SINRYNVPYS
AVPILQREGR LKYAATVAEY RSESSQKEKV KFSQATLIWG LPHGFTLYGG TQLSSHYHAL
AIGSGANLGD WGAVSLDVTQ ATSTLADNNT YQGQSLRFLY AKSLAQSGTN LQLMGYRYST
SGFYTLDDTT WKRMSGYDDD SRTDSDKSRP EWADYYNLYY TRRGKVQLDI NQQLGGLGSL
FITGSQQSYW HTDEKDSLLQ VGYSDTLAGI AWSVSYNNNK SAGDAERDQI FALNISVPLS
QWLQHDDEVT RHHNVYATFS TSTDKQHNVT QNAGLSGTLL DENNLSYNIQ QGYQNHGIGE
SGAASLEYDG AKGNANIGYN VSDNGDYQQV NYGLSGGLVA HAHGVTLSQP LGNTNILIAA
PGAANVGVVD QPGIHTDARG YAVVPYATTY RQNRMALDVN AMADDVDIDD AVTRVVPTEG
ALVLARFKAR VGARALVTLN HNGKPVPFGA TVTVNDRHAE AIVDEAGEVY LSGLSAQGVL
HVRWGNLPDQ QCVASYHLSS SRQILSRQHA ECH
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