Gene SeD_A0015 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSeD_A0015 
Symbol 
ID6874659 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Dublin str. CT_02021853 
KingdomBacteria 
Replicon accessionNC_011205 
Strand+ 
Start bp15016 
End bp15963 
Gene Length948 bp 
Protein Length315 aa 
Translation table11 
GC content40% 
IMG OID642783275 
Productputative LysR family transcriptional regulator 
Protein accessionYP_002213969 
Protein GI198245711 
COG category[K] Transcription 
COG ID[COG0583] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones7 
Plasmid unclonability p-value0.198187 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones70 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGGATCGA AAGGTGCCAA CAAGAGCTTT GATTATAATT TAATCAAAAT TCTTGACGCT 
GTTATTTTGT CAGGAAATGC GGCTATGGCG GCAAAAAAGT TAGGCATTAC ACCGGCTGCC 
GTTTCTCTGG CGTTAAAGCG CCTGCAGAGT TATTACCCGG AAGAACTGTT TAGCAGAGGG 
AAAGGCGGGC TCATCCCCAC AGCTAAGGCT GTCGACATTC ACCAAAATTT CAGTCAGGTG 
ATGAAACTGG TGGATGACAC CTTTCTCTGT AATAGTAAAA AAGATGAAGC GTTCCAGATA 
ACGTTATTAG GCAGTGATAT TGTTGAAAGC TATTATCTTT CTCAGCTCTA TAACAGCGAT 
ATATTTGACC GTATTTTGAT AAATCATTTC ACTGTCAGAA ATATGAGTCG GGAGCATATC 
AGCGAACTTC TGTTTACTGC GCAAGGCGAT CTGTTGATTA GTGCCGAACC TTTGCTGGAG 
TCCGGCATAG AGAATCAAAT TATTGATAGT TTTAAATCAT TTGTTTGTAT CTGTAGCAGT 
AAACACATGC TGAGTACCCT CTCACAACTG TCGCTACATC ATTTTTATTC TTCGCGTCAT 
GCGTTATATC AGCCGGGGAT GGGGGCTTCA GTGATATATC ATGATAGTGA ATTATTTAAG 
GATGAGCTTT ACTATACTGG CAGGCGTATT GTCGGCTATC GCAGTGATTC GCTTAACGGT 
TTGATGAGCA TGATCGAACG AACCTCATTG ATTGCATTGA TGCCTTTGAA ATTAGCGCTT 
TTTTATAAAA ATCATCGTAA ATATGACATT AAATTTATTC AGCCTCCGCC CGAACTGGCT 
TTGAAGTCAG TTCAGGTTTA TGCATCCTGG AATAAAAATA GTAGAAATAT ATCGACGATT 
AATGAGATGG TAAGTATGTT ACAAACGCTT TCCTCCTTCC GTCGTTAA
 
Protein sequence
MGSKGANKSF DYNLIKILDA VILSGNAAMA AKKLGITPAA VSLALKRLQS YYPEELFSRG 
KGGLIPTAKA VDIHQNFSQV MKLVDDTFLC NSKKDEAFQI TLLGSDIVES YYLSQLYNSD 
IFDRILINHF TVRNMSREHI SELLFTAQGD LLISAEPLLE SGIENQIIDS FKSFVCICSS 
KHMLSTLSQL SLHHFYSSRH ALYQPGMGAS VIYHDSELFK DELYYTGRRI VGYRSDSLNG 
LMSMIERTSL IALMPLKLAL FYKNHRKYDI KFIQPPPELA LKSVQVYASW NKNSRNISTI 
NEMVSMLQTL SSFRR