| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SeAg_B4435 |
|---|
| Symbol | metH |
|---|
| ID | 6794579 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salmonella enterica subsp. enterica serovar Agona str. SL483 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011149 |
|---|
| Strand | + |
|---|
| Start bp | 4326323 |
|---|
| End bp | 4330006 |
|---|
| Gene Length | 3684 bp |
|---|
| Protein Length | 1227 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 642778526 |
|---|
| Product | B12-dependent methionine synthase |
|---|
| Protein accession | YP_002149092 |
|---|
| Protein GI | 197247964 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0646] Methionine synthase I (cobalamin-dependent), methyltransferase domain
[COG1410] Methionine synthase I, cobalamin-binding domain |
|---|
| TIGRFAM ID | [TIGR00640] methylmalonyl-CoA mutase C-terminal domain
[TIGR02082] 5-methyltetrahydrofolate--homocysteine methyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGAGCAGCA AAGTTGAACA ACTGCGTGCG CAGTTAAATG AACGTATTCT GGTGCTGGAC
GGCGGTATGG GCACCATGAT CCAGAGCTAT CGTCTACATG AAGAAGATTT CCGCGGGGAG
CGCTTTGCCG ACTGGCCCTG CGACCTGAAA GGCAACAATG ACCTGCTGGT ACTCAGCAAG
CCGGAGGTGA TCGCCGCTAT CCACAACGCC TACTTTGAGG CTGGCGCGGA TATCATCGAA
ACCAACACCT TTAACTCGAC AACCATTGCG ATGGCGGATT ACCGGATGGA ATCCCTGTCG
GCGGAAATTA ACTATGCGGC GGCCAAACTG GCGCGCGCCT GCGCCGATGA ATGGACGGCG
CGAACACCAG AAAAACCACG CTTTGTTGCG GGCGTGCTTG GTCCAACTAA CCGCACGGCC
TCCATTTCGC CGGACGTCAA CGACCCGGCG TTTCGTAATA TCACCTTCGA TCAGCTGGTG
GCGGCCTACC GTGAATCCAC CAAAGCGCTG GTGGAAGGCG GGGCGGACCT GATCCTGATT
GAAACCGTCT TCGACACCCT CAACGCCAAA GCGGCGGTGT TTGCGGTGAA AGAAGAGTTT
GAAGCGCTGG GCGTTGATCT GCCGATCATG ATTTCCGGCA CCATTACCGA TGCTTCTGGC
CGTACGCTCT CCGGCCAAAC CACGGAAGCA TTCTACAACT CCCTGCGTCA CGCCGACGCA
CTAACTTTCG GCCTCAACTG CGCCCTCGGC CCGGATGAGC TCCGCCAGTA CGTGCAGGAG
CTGTCACGCA TTGCCGAATG CTACGTCACC GCGCACCCGA ACGCCGGTCT GCCGAACGCT
TTCGGCGAGT ACGACCTCGA TGCCGACACC ATGGCAACGC AAATCCACGA ATGGGCCGAA
GCGGGCTTCC TCAACGTGGT TGGCGGCTGC TGTGGCACCA CGCCGGAGCA TATCGCGGCG
ATGAGTCGAG CGGTGGATGG CTTACCGCCG CGCAAGTTGC CAGAAATCCC GGTCTCCTGC
CGTCTGTCCG GCCTTGAACC GCTGAATATC GGCGACGATA GCCTGTTTGT GAACGTCGGT
GAACGTACCA ACGTCACCGG CTCAGCGAAA TTTAAGCGAC TGATTAAAGA AGAGAAGTAC
AGCGAAGCGC TGGACGTCGC CCGCCAGCAG GTGGAAAGCG GCGCGCAGAT TATCGATATC
AATATGGATG AGGGGATGCT CGACGCTGAA GCGGCGATGG TGCGCTTCCT CAACCTGATT
GCCGGCGAGC CGGATATCGC CCGCGTGCCG ATTATGATCG ACTCCTCGAA ATGGGAAGTT
ATCGAAAAAG GGCTGAAGTG CATTCAGGGT AAAGGCATCG TGAACTCCAT CTCGATGAAA
GAGGGTGTGG AGACCTTTAT CCATCACGCG AAGCTGCTGC GTCGCTACGG CGCCGCGGTG
GTGGTGATGG CTTTTGACGA GCAGGGACAG GCCGACACCC GCGAACGCAA AATTGAGATT
TGCCGCCGAG CCTACAAAAT TCTCACCGAA GAGGTGGGCT TCCCGCCGGA AGACATCATC
TTCGACCCGA ATATCTTTGC CGTCGCCACC GGTATTGAAG AGCACAACAA CTACGCGCAG
GACTTTATCG GCGCCTGTGA GGACATCAAA CGCGAGCTGC CGCACGCGCT GATTTCCGGC
GGCGTGTCTA ACGTTTCCTT CTCGTTCCGC GGCAACGACC CGGTACGTGA AGCTATTCAC
GCGGTATTCC TCTACTACGC CATTCGCAAC GGCATGGACA TGGGCATCGT CAATGCCGGA
CAGCTGGCTA TCTACGACGA CCTTCCCGCC GAACTGCGCG ATGCGGTTGA AGATGTCATT
CTTAACCGTC GCGATGACGG CACTGAGCGT TTGCTGGATT TGGCGGAGAA ATACCGCGGC
AGCAAAACCG ACGAAGCTGC CAACGCCCAA CAAGCGGAAT GGCGCTCCTG GGATGTCAAA
AAACGCCTTG AATACTCGCT GGTGAAAGGC ATTACCGAGT TTATCGAGCA GGATACCGAA
GAAGCCCGTC AGCAGGCCGC CCGCCCGATT GAGGTGATCG AAGGGCCGCT GATGGACGGC
ATGAATGTGG TCGGCGACCT GTTTGGCGAA GGGAAAATGT TCCTGCCGCA GGTGGTGAAA
TCGGCCCGCG TAATGAAGCA GGCGGTGGCC TACCTCGAAC CGTACATTGA GGCCAGCAAA
GAGAAAGGTT CCAGCAACGG CAAGATGGTC ATCGCCACGG TGAAGGGTGA CGTACACGAT
ATCGGTAAAA ATATCGTCGG CGTGGTGCTG CAGTGTAATA ACTACGAAAT CATCGATCTC
GGCGTGATGG TGCCAGCGGA TAAAATCCTC AAAACGGCGA AAGAGGTGAA CGCGGACCTG
ATTGGCCTCT CCGGCCTGAT TACCCCGTCG CTGGATGAAA TGGTCAACGT GGCAAAAGAG
ATGGAGCGTC AGGGCTTCAC CATCCCACTG CTCATTGGCG GCGCGACAAC GTCGAAAGCG
CACACCGCGG TGAAAATTGA GCAGAACTAC AGCGGTCCGA CGGTCTACGT GCAGAATGCT
TCGCGTACCG TGGGCGTGGT GGCGGCGCTA CTCTCCGACA CCCAGCGCGA TGACTTTGTC
GCCCGTACCC GCAAAGAGTA CGAAACCGTG CGTATTCAGC ACGCCCGCAA AAAACCGCGT
ACGCCGCCGG TCACGCTGGA GGCGGCGCGC GATAATGATC TGGCATTCGA TTGGGAACGC
TACACCCCGC CGGTAGCCCA CCGTTTGGGC GTGCAGGAGG TGGAAGCCAG CATCGAAACT
CTGCGCAACT ACATCGACTG GACGCCGTTC TTTATGACCT GGTCGCTGGC CGGCAAATAC
CCGCGCATTC TGGAAGATGA GGTGGTGGGC GTTGAGGCGC AGCGTCTGTT TAAAGACGCC
AATGATATGC TGGATAAACT GAGCGCCGAG AAACTGTTGA ATCCGCGTGG CGTGGTGGGC
CTGTTCCCGG CGAACCGCAT TGGCGATGAC ATCGAAATTT ATCGCGACGA AACCCGTACT
CATGTTCTGA CGGTCAGCCA CCACCTGCGC CAGCAGACCG AGAAAGTCGG TTTTGCCAAC
TACTGTCTGG CGGATTTTGT CGCGCCGAAA CTGAGCGGAA AAGCGGATTA CATCGGTGCT
TTCGCAGTCA CCGGCGGTCT TGAAGAAGAC GATCTGGCTG ATGCTTACGA AGCGCAACAC
GACGACTATA ACAAGATCAT GGTGAAAGCG ATTGCCGACC GTCTGGCGGA AGCGTTTGCC
GAGTATCTGC ATGAGCGTGT ACGTAAGGTT TACTGGGGAT ATGCGCCGAA CGAGAGCCTG
AGTAACGACG AATTAATCCG CGAAAACTAC CAGGGGATTC GCCCGGCGCC GGGTTATCCT
GCCTGCCCGG AACATACCGA AAAAGGCACT ATCTGGCAGC TACTGGATGT CGAAAAACAC
ACCGGGATGA AGCTCACCGA ATCTTTCGCC ATGTGGCCTG GCGCGTCGGT CTCCGGCTGG
TACTTCAGCC ATCCTGAGAG CAAATACTTC GCGGTAGCGC AGATCCAACG CGATCAGGTG
ACAGATTATG CTTTCCGTAA AGGAATGAGC GTTGAGGACG TTGAGCGGTG GCTGGCGCCA
AACCTGGGTT ATGATGTGGA TTAA
|
|---|
| Protein sequence | MSSKVEQLRA QLNERILVLD GGMGTMIQSY RLHEEDFRGE RFADWPCDLK GNNDLLVLSK
PEVIAAIHNA YFEAGADIIE TNTFNSTTIA MADYRMESLS AEINYAAAKL ARACADEWTA
RTPEKPRFVA GVLGPTNRTA SISPDVNDPA FRNITFDQLV AAYRESTKAL VEGGADLILI
ETVFDTLNAK AAVFAVKEEF EALGVDLPIM ISGTITDASG RTLSGQTTEA FYNSLRHADA
LTFGLNCALG PDELRQYVQE LSRIAECYVT AHPNAGLPNA FGEYDLDADT MATQIHEWAE
AGFLNVVGGC CGTTPEHIAA MSRAVDGLPP RKLPEIPVSC RLSGLEPLNI GDDSLFVNVG
ERTNVTGSAK FKRLIKEEKY SEALDVARQQ VESGAQIIDI NMDEGMLDAE AAMVRFLNLI
AGEPDIARVP IMIDSSKWEV IEKGLKCIQG KGIVNSISMK EGVETFIHHA KLLRRYGAAV
VVMAFDEQGQ ADTRERKIEI CRRAYKILTE EVGFPPEDII FDPNIFAVAT GIEEHNNYAQ
DFIGACEDIK RELPHALISG GVSNVSFSFR GNDPVREAIH AVFLYYAIRN GMDMGIVNAG
QLAIYDDLPA ELRDAVEDVI LNRRDDGTER LLDLAEKYRG SKTDEAANAQ QAEWRSWDVK
KRLEYSLVKG ITEFIEQDTE EARQQAARPI EVIEGPLMDG MNVVGDLFGE GKMFLPQVVK
SARVMKQAVA YLEPYIEASK EKGSSNGKMV IATVKGDVHD IGKNIVGVVL QCNNYEIIDL
GVMVPADKIL KTAKEVNADL IGLSGLITPS LDEMVNVAKE MERQGFTIPL LIGGATTSKA
HTAVKIEQNY SGPTVYVQNA SRTVGVVAAL LSDTQRDDFV ARTRKEYETV RIQHARKKPR
TPPVTLEAAR DNDLAFDWER YTPPVAHRLG VQEVEASIET LRNYIDWTPF FMTWSLAGKY
PRILEDEVVG VEAQRLFKDA NDMLDKLSAE KLLNPRGVVG LFPANRIGDD IEIYRDETRT
HVLTVSHHLR QQTEKVGFAN YCLADFVAPK LSGKADYIGA FAVTGGLEED DLADAYEAQH
DDYNKIMVKA IADRLAEAFA EYLHERVRKV YWGYAPNESL SNDELIRENY QGIRPAPGYP
ACPEHTEKGT IWQLLDVEKH TGMKLTESFA MWPGASVSGW YFSHPESKYF AVAQIQRDQV
TDYAFRKGMS VEDVERWLAP NLGYDVD
|
|---|
| |