Gene SeAg_B4407 details

Gene Information

• Locus tag: SeAg_B4407
• Symbol: thiC
• ID: 6793012
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Salmonella enterica subsp. enterica serovar Agona str. SL483
• Kingdom: Bacteria
• Replicon accession: NC_011149
• Strand: -
• Start bp: 4298680
• End bp: 4300575
• Gene Length: 1896 bp
• Protein Length: 631 aa
• Translation table: 11
• GC content: 58%
• IMG OID: 642778502
• Product: thiamine biosynthesis protein ThiC
• Protein accession: YP_002149072
• Protein GI: 197250591
• COG category: [H] Coenzyme transport and metabolism
• COG ID: [COG0422] Thiamine biosynthesis protein ThiC
• TIGRFAM ID: [TIGR00190] thiamine biosynthesis protein ThiC

Plasmid Coverage information

• Num covering plasmid clones: 21
• Plasmid unclonability p-value: 0.679063
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTCTACAA CAACGTTAAC CCGCCGCGAG CAGCGCGCTA AAGCCCAGCA TTTTATCGAT 
ACGCTGGAAG GGACTGCCTT TCCCAACTCG AAACGCATCT ACGTGACCGG TTCGCAGCAT 
GATATTCGCG TACCGATGCG CGAAATTCAA CTTAGCCCAA CGCTCATCGG CGGCAGCAAA 
GACAACCCGC AGTTTGAAGA GAACGAAGCC GTGCCGGTGT ACGACACCTC CGGCCCCTAT 
GGCGATCCTG AGGTGGCGAT TAACGTCCAG CAGGGTCTGG CAAAGCTACG CCAGCCGTGG 
ATTGAAGCGC GGGCTGATGT AGAAACGCTT GCTGACCGCA GTTCTGCCTA TACCCGCGAA 
CGCTTGACAG ATGAAGGGCT TGACGCATTA CGCTTTACCG GTCTGTTAAC GCCAAAACGC 
GCCAAAGCCG GACACCGCGT GACGCAACTT CATTATGCCC GCCAGGGGAT CGTCACTCCC 
GAAATGGAGT TCATCGCCAT CCGTGAAAAT ATGGGCCGCG AGCGCATTCG CAGTGAAGTA 
CTGCGCCACC AGCATCCGGG GATGAGCTTT GGCGCGCGCC TGCCGGAAAA CATTACCCCG 
GAATTCGTGC GTGATGAAGT CGCCGCGGGC CGCGCGATTA TTCCCGCCAA CATCAACCAC 
CCGGAATCCG AGCCGATGAT TATCGGCCGC AACTTCCTGG TCAAAGTGAA TGCCAACATC 
GGCAACTCGG CGGTGACCTC CTCCATCGAA GAAGAGGTGG AAAAACTGGT GTGGTCGACC 
CGCTGGGGCG CGGACACGGT AATGGACCTT TCCACCGGCC GCTATATTCA CGAAACCCGT 
GAGTGGATCC TGCGTAACAG CCCGGTACCG ATCGGCACCG TCCCGATCTA CCAGGCGCTG 
GAAAAGGTCA ACGGGATCGC CGAAGATCTT ACCTGGGAAG CGTTCCGCGA CACGCTGCTG 
GAGCAGGCCG AACAGGGCGT CGACTACTTC ACCATCCACG CGGGCGTGCT GCTGCGCTAC 
GTGCCGATGA CCGCCAAGCG CCTGACCGGC ATTGTCTCAC GCGGCGGTTC AATCATGGCG 
AAATGGTGCC TTTCTCATCA CAAAGAGAAC TTCCTGTTCG AACATTTCCG CGAGATTTGT 
GAAATCTGCG CCGCCTACGA CGTTTCCCTG TCGCTGGGCG ACGGCCTGCG TCCCGGCTCC 
ATTCAGGACG CCAACGACGA AGCGCAGTTC TCCGAGCTGC ATACGCTGGG CGAATTGACC 
AAAATCGCCT GGGAATACGA CGTGCAGGTG ATGATTGAAG GCCCGGGCCA CGTACCCATG 
CATATGATCC AGCGCAATAT GACCGAAGAG CTGGAGAGCT GCCATGAAGC ACCGTTCTAC 
ACCTTAGGGC CATTGACCAC CGATATCGCG CCGGGCTATG ACCACTTCAC CTCCGGGATC 
GGTGCCGCGA TGATCGGCTG GTTTGGCTGC GCGATGCTGT GTTATGTGAC GCCGAAAGAA 
CACCTCGGCC TGCCGAACAA AGAAGATGTG AAGCAGGGGC TAATCACCTA CAAAATCGCC 
GCCCACGCCG CGGATTTAGC CAAAGGACAT CCGGGCGCAC AGATCCGCGA TAACGCCATG 
TCGAAAGCGC GCTTTGAATT CCGCTGGGAA GATCAGTTTA ACCTCGCGCT CGACCCGTTC 
ACCGCCCGCG CTTATCACGA TGAAACCCTG CCGCAGGAGT CCGGTAAGGT CGCTCACTTC 
TGTTCCATGT GCGGGCCGAA GTTCTGCTCG ATGAAAATCA GCCAGGAAGT CCGTGACTAC 
GCCGCCGCGC AAACCATTGA AGTGGGGATG GCGAATATGT CGGAAAACTT CCGCGCCAAA 
GGCGGCGAAA TTTATCTCAA GCGGGAGGAA GTCTGA 

 

Protein sequence

MSTTTLTRRE QRAKAQHFID TLEGTAFPNS KRIYVTGSQH DIRVPMREIQ LSPTLIGGSK 
DNPQFEENEA VPVYDTSGPY GDPEVAINVQ QGLAKLRQPW IEARADVETL ADRSSAYTRE 
RLTDEGLDAL RFTGLLTPKR AKAGHRVTQL HYARQGIVTP EMEFIAIREN MGRERIRSEV 
LRHQHPGMSF GARLPENITP EFVRDEVAAG RAIIPANINH PESEPMIIGR NFLVKVNANI 
GNSAVTSSIE EEVEKLVWST RWGADTVMDL STGRYIHETR EWILRNSPVP IGTVPIYQAL 
EKVNGIAEDL TWEAFRDTLL EQAEQGVDYF TIHAGVLLRY VPMTAKRLTG IVSRGGSIMA 
KWCLSHHKEN FLFEHFREIC EICAAYDVSL SLGDGLRPGS IQDANDEAQF SELHTLGELT 
KIAWEYDVQV MIEGPGHVPM HMIQRNMTEE LESCHEAPFY TLGPLTTDIA PGYDHFTSGI 
GAAMIGWFGC AMLCYVTPKE HLGLPNKEDV KQGLITYKIA AHAADLAKGH PGAQIRDNAM 
SKARFEFRWE DQFNLALDPF TARAYHDETL PQESGKVAHF CSMCGPKFCS MKISQEVRDY 
AAAQTIEVGM ANMSENFRAK GGEIYLKREE V