| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SeAg_B4085 |
|---|
| Symbol | |
|---|
| ID | 6793652 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salmonella enterica subsp. enterica serovar Agona str. SL483 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011149 |
|---|
| Strand | + |
|---|
| Start bp | 3984762 |
|---|
| End bp | 3986552 |
|---|
| Gene Length | 1791 bp |
|---|
| Protein Length | 596 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 642778201 |
|---|
| Product | HTH-type transcriptional regulator SgrR |
|---|
| Protein accession | YP_002148795 |
|---|
| Protein GI | 197251135 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG4533] ABC-type uncharacterized transport system, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGCTCATTC CCGTTCGGGA AATTTCACCT TTTATGACAA CCCGGCACAC TGAACAAAAA
TACTTAAAGC TACTCCAGCA CTATGGCGAC AAGCCTGTTA GCGTGACGCT ACAGGAGCTG
GCGGATGTGT TGTTCTGCAC CCGGCGGCAT ATGCGTAATC TGTTGCTTCA GATGCAGGAG
GCAAAGTGGC TCATCTGGCA ATCACAGGCC GGACGTGGGC ATCGCGCCCG GCTTCACCTG
CGCTATAAAC CAGAACAGCT GTTAAGCGAA AAGGCGGAGC AGTTGCTGGA GTCTGGTCAT
GTTGATCAGG CCATTCAACT GCTGGGTAAA AATAAGCACC AGGTGGCGCA ACTGCTGCGT
TCAAAGCTGG GCTATAGCGT GCGGGCAGAC TATCAGCGGC TGTGCATCCC CTATTACCGG
ACAATGCCGT CACTGTGCCC CGGCATACCG TTGCGTCGCT CTGAGCAGCA TCTGGTCAGG
CAGATTTTTA GCGGCCTGAC GCGCATAAAT GAGGAAAAAG GTGAAGTCGA AGCCGATCTT
GCCCACCACT GGCGGCAGAT TGATCCACTG CGCTGGCGTT TTTATCTGCG CCCCGCCGTC
CTCTGGCATG ATGGTCAGGA GCTGACGATC GACGCGGTTA TCGCTTCACT GACCCGCAGC
GCTAAGCTGC CGTTGTTCTC GCACTTGCAG ACCATTCAGG CCACCGGGCC GCTGAGCCTT
GAAATTACGC TGGCGCACCC GGATAACCGA CTGCCGCTGC TGCTCAGCCA TATTGATGCC
ATGATCCTAC CGCCTGACCA TACACAACGC GCTGATTTCC CGGCACATCC TGTGGGGACT
GGCCCTTATG AGGTGGTGGA AAACAATGGC TTTCATCTGC AAATGAAGGC CTTTGACCAC
TATTTCGGCC TGCGCGGGCT GCTGGATGAA GTGGAGGTCT TTATCTGGCC GAATTTAACG
GAGACAGACA ACCTGGCGGA ATCGCTGTCG GATAACGACA CGGCAGCCTG GCTCAGCTCC
AGCCTGAGCG ATGAGGATTA CGTTTCCGGA CGGCTTAGCC AGGTATCAGG CAAACCTTCT
GACAACCTGC GCGAGATGTT TCTTGAGCGT GGAGGATATT TTTTATTATG CGACAGCCGC
TCCCCGCACT GGCATACCGC CGAACATCGC CGCTGGCTAC GGGAAACACT CAGCCCTTAC
GCCATACTCC AGCATCTGAG TGAGGCAATT CGCCCCTTCT GGGTACCGGG CGGCAGCCTG
CTGTCCTCCT GGTTTCATAC TATTGAGGCG GGCCCGGCCT GTTCACCTTT TATCTCGTCG
TCGCCCTACG CAAAACTGCG TCTGGCCTAT CACGATCAGC ACCCTGAATT TCCAATGCTC
CTGGATATCA TGCAAGAGAT CATGCGCCAG CAGGGCATTT TACTTGAGGG CGTTGAGCTG
AATTATGATG ACTGGGCGAA TGGCAAAGCC AATGTGGATC TCTGGCTGGG GACGGTCAAT
TTCCCCATTC CCGAAGAGTG GAACGTCGGT ACATGGCTAC TGGGCTCCCC TTTACTGCGC
CATGCCATCA GCGGTGGGGA TGATGCGCTG CTGGCCCAAT GGGAAACCCA GTGGCATGCC
GAAACCATCA GCGCGGAACA ACTGGTCAGG GAAACCACCC GTTCAGGCTG GCTACAGCCG
CTGTTTCACC ACTGGATGCG ACTCAAAAGC CCCGACCGGG CCAGGGGGAT CCACCTGAAT
AACCTGGGAT GGTTTGATTT CCGATCCACC TGGATTGAGC CAGGGCCTTA A
|
|---|
| Protein sequence | MLIPVREISP FMTTRHTEQK YLKLLQHYGD KPVSVTLQEL ADVLFCTRRH MRNLLLQMQE
AKWLIWQSQA GRGHRARLHL RYKPEQLLSE KAEQLLESGH VDQAIQLLGK NKHQVAQLLR
SKLGYSVRAD YQRLCIPYYR TMPSLCPGIP LRRSEQHLVR QIFSGLTRIN EEKGEVEADL
AHHWRQIDPL RWRFYLRPAV LWHDGQELTI DAVIASLTRS AKLPLFSHLQ TIQATGPLSL
EITLAHPDNR LPLLLSHIDA MILPPDHTQR ADFPAHPVGT GPYEVVENNG FHLQMKAFDH
YFGLRGLLDE VEVFIWPNLT ETDNLAESLS DNDTAAWLSS SLSDEDYVSG RLSQVSGKPS
DNLREMFLER GGYFLLCDSR SPHWHTAEHR RWLRETLSPY AILQHLSEAI RPFWVPGGSL
LSSWFHTIEA GPACSPFISS SPYAKLRLAY HDQHPEFPML LDIMQEIMRQ QGILLEGVEL
NYDDWANGKA NVDLWLGTVN FPIPEEWNVG TWLLGSPLLR HAISGGDDAL LAQWETQWHA
ETISAEQLVR ETTRSGWLQP LFHHWMRLKS PDRARGIHLN NLGWFDFRST WIEPGP
|
|---|
| |