| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SeAg_B2662 |
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| Symbol | |
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| ID | 6793869 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Salmonella enterica subsp. enterica serovar Agona str. SL483 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011149 |
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| Strand | - |
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| Start bp | 2595074 |
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| End bp | 2601247 |
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| Gene Length | 6174 bp |
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| Protein Length | 2057 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 642776849 |
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| Product | ShdA |
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| Protein accession | YP_002147466 |
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| Protein GI | 197249704 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3468] Type V secretory pathway, adhesin AidA |
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| TIGRFAM ID | [TIGR01414] outer membrane autotransporter barrel domain
[TIGR02601] autotransporter-associated beta strand repeat |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.285141 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGAACAGGA CCTACAGTAT TGTCTGGAGC GCCGTGCGAA ATATGTATGT TGTGGCTTCA
GAACTGGCGC GAGGCCACAG CAAAGTTAAA GCGCAAGTAT GCGCGAGTGA AACCCATTCC
CCAAATAAAA AGTCCGAATA TGGACAAATA ATAAAAGCAA CGCGAGCGGC GCTGGCTTGC
GCCGTGGCTG CGGCGCTCGG ATTTTTCAGC CCGCTGGCCA TGGCCGATAA TCCGGTATCC
TACATTGACG GAACCGAGCA CGACTTGAGC ACAGAAACGT CTCCAATCTC TTATTCAGGT
ACCGGCCAGG GTACAGCACT GTCTCTGGAA GGTCTGCCAA CGGATAAGGG GGGCTGGCAG
GCAACGTCGG GTACAGGCAC GGATGTTGTG ATTGAAACAG ACGGCGGTGG AGACATCCTC
TCAGGTAGTA CTCGTGCGAT CGGCACGGCG GTTTCGCTTA ACAAAGGGGC GACGCTTAAC
CTTACCGACG CACAAATCAC TACGACAGGA ATCTACACTG CCGGCATCGA TCTCAAAGAA
CAAAGTAGCA TGACACTAAC GGGGGGAATC ATCCAGATCG GGGGGAACTA TGGTGTCCTG
ACGCTCAATG GCGAGTCAAA AGCAACCTTG ATAGGGACTG AGGTTAAGGC GACAACGGAA
AATACCAGTG ACTTAACATC GCAAGAAGGA AGTACGCTGA GAATTGAGGG CGGCAGCACA
ATCACGCTGA CAAACGGCCA GGTGCGTGTG GTTGGCGATA CGACATACAA CTCCTGGCTG
GAGGTGGACG GTAGTGCAGT TAGTTCCACG GGTACAGACA GTACTGTTAT TGCGTCCAAC
AAGGGCGTTC TTGATATTAC GAACTCTACC GTCACGCACG ATAATGCCAA AGGCGCCGCC
ATTGAGGCCG CTAACGCCTC AACGGTGAAT ATTTCCGGCG ACAATAAAAG CTCAATGTTC
ATTAAATCCG AAGGCATAGG CATTAAAAGC GCGAGATCTT CCGTCAACAT TGACGGTGCC
ACCGTCGAAG CCAAAGGCGA TGGCATTTTG ATGACCACGG GAGGTAGCAC CTTTTACAGC
AATATCTCCG GGCTGACGGT CGAAAATGCG GACGTGACTT CATCAGACGC CGCCGCGCTG
CACGTTGATA AAAACACGGT GATAGAAACG CCCATTACAC TAACCGACAG CACATTGACC
GGCCCAACGG CTATTAAACT GGATAATGCG GCAACCGTAG AGGCCAAAAA CACAACGCTG
AATGGCAACA TTGAAGCGGG GAGCACAGTA TCGGCCTTGT CGCTGGCCGA AAAATCCTCA
CTGCAAGGGA GCGTCAACGG CCTGAACAGT TCATTGTCGC TCGACGACAC CAGCCTGTGG
AACATGACCG ACCCGTCAAC CGTCGGCAAC CTGACCAACG ACGGCGGCAT TACGCTGGGC
AACGCGAGCG GTTCGACAGG TACGCTGCTG ACGGTGGATA ATACCCTGAC CTTGCAGGAC
GGCAGCCAGA TAAACGCGAC GCTGGATACT GCCAACAGCT CGCCAATTAT CAAAGCCGCC
AACGTCACGC TGGACGGGAC GCTGAACCTT AGCTCAACGG CCACCTTTGT CGCGCCCGAA
ACCGACGAAC ACTTTGGATC GGTCACGCTG ATTGATTCGC AAACTGCGAT CACTACCGAT
TTTGACAGCG TAACGCTGAA TGCCGACACC TCTGCTATGC CGGATTACCT TACGATCAAC
GCGGGCGTTG ATGCGAATGA TAATACCAAC TACGAGTTGT CTACGGGCTT GAGTTGGTAC
GCGGGCGCAA ATTCTGCGCG CGCTGCGCAT GGCACTTTTA CCGTTGATGC AGACAGTACC
TTTACCGTCA CCAGCGAACT GGACGAAACC ACGGCTAACT CCAACTGGGG TGGCAGCAAG
CTAACCAAAC AGGGCGACGG CACGCTGATC CTCAGCAACA CCGGCAACGA CTACGGCGAC
ACTGAAATTG TCGGCGGCAT TCTGGCCGCC AAAGACGCCG CCTCGCTCGG CACTGGCGAT
GTGACGATTG CAGAAAACGC AACGCTTGCG CTGAGCCAGG GCACGCTGGA TAACAACGTG
ACCGGCGAGG GCCAAATTGT CAAAAGCGGT AGCGATGAGC TGATCGTGAC CGGCGATAAC
AATTACTCCG GCGGCACCAC TATTTCCGGC GGTACGCTGT CTGCGAAAGA CGCCGCCTCG
CTCGGCAGCG GCGACGTGGA CATTGCTGAA AACGCAAAGC TTGAGTTGAG CCAGGGCACG
CTGGATAACA ACGTGACCGG CGGGGGCCAA ATTGTCAAAA GCGGTAGCGA TGAGCTGATC
GTGACCGGTG CTAATGACTA TAGCGGCGGC ACCACTATTA CCGGCGGTAC GCTGACGGCT
GACCATGCGG ATTCGCTGGG CAGCGGTGAT ATCGACAACA GCGGCGTGCT TCAGGTCGGC
GAGGGCGAGC TGAAAAATAC ACTTTTCGGC AGCGGCTCGC TGGTGAAAAC CGGTACGGGC
GAGCTGACGC TAAGCGGCGA TAACAGCTAT TCCGGCACCA CCACTATCAC TGACGGCACG
CTGATTGCCG CCAGCGTCAA CGCGCTGGGT AGCGGCGATA TCGACAACAG CGGCGTGCTT
CAGGTCGGCG AGGGCGAGCT GAAAAATACA CTTTTCGGCA GCGGCTCGCT GGTGAAAACC
GGTACGGGCG AACTGACGTT AAACGGCGAT AACGATTACT CCGGCGGCAC CACCATTGAC
GACGGTGTGC TGATTGCCGC CAGCGTCAAC GCGCTGGGCA GCGGCGATAT CGACAACAGC
GGCGTGCTTC AGGTTGGCGA GGGCGAGCTG AAAAATACGC TTTTCGGCAG CGGCTCGCTG
GTGAAAACCG GTACGGGCGA GCTGACGTTA AGCGGCGATA ACACTTACTC CGGCGGCACC
ACTATTTCCG ACGGCACGCT GATTGCTGAC CATGCGGATT CGCTGGGTAC CGGAGCTGTT
GCCAACAGCG GTGTGCTTCA GGTCGGTGAG GGCGAGCTGG AAAATACGCT TTCCGGCAGC
GGTTCGCTGG TCAAAACCGG TACCGGCGAG CTGACGTTAG GCGGCGATAA CAGCTATTCC
GGCGATACCA CCATCGCCGA CGGCACGCTG ATTGCCGCCA ACGTCAACGC GCTGGGCAGC
GGCAATATCG ACAACAGCGG TACGCTGATG CTGGATGCCA ACGGCGCATT TGAGCTTGCG
AACATCACCA CCCATAGCGG CGCCACGACC GCGCTGGCGG CGGGCAGCAC CCTTGACGCG
GGCCAGCTCA CCCAGGAAGA CGGCAGTACG CTAAGTATTG ACCTCGGCGC GGCCACCGAC
GACGCCGTGA TTACCGCCGA CAGCGTCACG CTGGGCGGCA CTCTGAATGT TACCGGCATC
GGCAGCGTTA CGGACAGTTG GACGCCTGAG GCATACACCT ACACGCTGAT TGACAGCGAC
AGCGCCATTA CGAGCGATTT CGACGATCTG ACCATTGCAG GGATGAACCG CGAAGATGTT
GACTTCCTGA CTATCGACGG AAAAGTCGAT GAAACGGACA ACACCAACTA TGATCTGACG
GCCTCCCTCT CCTGGTATGC GGACAGAGAC AACGCCACTA CCGACGCCCA CGGCACCTTT
ACCCTGAGCG ACCCTGACGG CAGCTTTAAC GTTGCGGCTA CACTGACAGA CGTTGACGAT
ACGCTGGATC CGGGTAGCAG ATGGGACGGT AAATCGCTGA CCAAAGAAGG CGCAGGCACG
CTGATCCTCT CTGGCGACAA CGACTACAGC GGCGGCACCA CCATCAATGA AGGTACGCTG
GTCGCCGCCA GTACGACGGC GCTGGGCACC GGTCTGGTAG ACAATAATGC CACGCTGGTG
CTGGACGCAG ACGGTGAAGT CAGCGCGGTG GGCGGCATCA CCACTCATAG CGGCGCGACG
ACCCAACTGG CGCTCGGCAC CTCGTTGGAT CTCGGCGACA GCGCGTTAAT TCAGCAAGAT
GGCAGTACGC TGAACGTTGA GCTGAATAGT GACTCAGTGC AACCGCTGAT TACCGGCGGC
AGCGCCACGC TTGGCGGCAA TTTGGTCGTC AGCGACGCCA GCCTGCAAGC GCGCGCCTCC
GACGCGGAGT TCCAGTCCTT TAAACTGATG GATATGGACA GCGATATCAG CGGCGACTTT
ACCAGCCTGA CGATGAACCT CACCGACCAG CCGGACTATC TGACCGTAAC CGGGACAATC
AATCCTGAAG ATGCGTCAGA ATATCTGCTT ACCGAAGGGC TGAGCTGGAA TGCGACCGCC
ACGTCAGCGA CGCCAGCACA CGGCACGTTT ACTCTGGGCG CAGGCGACAG TTTTGAAGTC
ACCAGCGTAC TGGGCGATAA AACCGGCAAC GGCGACTGGG ACGGTAAATC GCTGACCAAA
CTGGGAGCGG GTAAACTGAC GCTGAGCGGC GCGAACACCT ACACCGGCGA TACTAACGTA
CAGGAAGGCA CGCTATGGCT GTCCGGAGAC GGCTCGATTG GCGAGATGGG CAGCCAGCAG
GCGGTGAACG TCGCCTCCGG GGCGACCTTC GGCGGCAGCA ACGGTACTAC CGTTAACGGT
AAGGTGACCA ACGAAGGGAC GCTGGTCTTC GGCGACAGCG AGGAAACAGG CGCCATCTTC
ACCCTCAATG GCGATCTGAT CAACATGGGG ACAATGACCA GCGGTAGCAG CTCCAGCACG
CCTGGCAATA CGCTTTATGT TGATGGCAAT TACACCGGCA ACGGCGGCTC GCTTTACCTG
AATACCGTCC TGGGCGACGA TGATTCGGCG ACCGATAAGT TGGTCATTAC CGGCGATGCC
TCCGGCACCA CCGATCTGTA CATCAACGGC ATCGGCGATG GAGCACAGAC CACTAACGGT
ATCGAAGTGG TGGATGTTGG CGGCGTATCG ACCAGCGATG CGTTTGAGCT AAAAAATGAG
GTTAACGCCG GTCTGTATAC CTACCGTCTG TACTGGAATG AAAGTGACAA CGACTGGTAT
CTGGCATCAA AAGCACAGTC TGATGATGAC GACAGCGGCG GTGATGACAC GCCTTCGGAT
GGCGGTGACG ATGGCGGTAA TGTCACGCCT CCGGACGATG GCGGCGATGG CGGTAATGTC
ACGCCTCCGG ACGACGGCGG CGACGGCGGC GATGTCACGC CTCCGGACCA CGGCGGCGAT
GTCGCACCGC AGTACCGTGC GGATATCGGC GCGTACATGG GCAACCAGTG GATGGCGCGC
AACCTGCAAA TGCAGACCCT CTATGACCGC GAGGGCAGCC AGTATCGTAA TGCCGATGGC
AGCGTATGGG CGCGCTTCAA AGCGGGTAAA GCGGAATCCG AGGCTGTCAG CGGCAATATC
GATATGGACA GCAACTACTC CCAGTTCCAG CTAGGCGGTG ACATTCTGGC CTGGGGTAAC
GGCCAGCAGA GCTTTACCGT TGGCGTCATG GCGAGCTACA TCAACGCCGA TACCGACAGC
ACCGGTAACC GTGGCGCAGA CGGTAGCCAG TTCACCAGTA GCGCCAACGT AGACGGCTAC
AACCTCGGTG TCTATGCCAC CTGGTTTGCC GATGCCCAAA CGCATAGCGG CGCGTATGTC
GATAGCTGGT ATCAATACGG TTTCTACAAC AACAGCGTAG AGAGCGGTGA TGCGGGATCT
GAATCTTATG ATTCAACCGC TAACGCTGTC TCGCTGGAAA CCGGTTATCG CTACGATATT
GCGCTTAGCA ACGGTAATAC TGTCAGTCTG ACGCCGCAGG CGCAGGTTGT CTGGCAGAAT
TACTCAGCGG ATAGCGTGAA GGATAACTAC GGCACCCGGA TCGATGGTCA GGATGGCGAC
AGTTGGACAA CGCGTCTGGG TCTGCGTGTT GACGGCAAGC TGTACAAAGG CAGCCGTACG
GTTATCCAGC CGTTTGCTGA AGCTAACTGG CTGCACACCA GCGATGATGT GTCGGTATCG
TTTGATGATG CCACGGTGAA ACAGGATCTT CCGGCTAACC GTGCGGAGCT GAAAGTGGGT
CTGCAGGCAG ATATCGATAA GCAGTGGAGC GTTCGCGCTC AGGTTGCCGG GCAGACTGGC
AGCAATGATT TTGGCGATCT GAACGGTAGC CTCAATCTGC GCTATAACTG GTAA
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| Protein sequence | MNRTYSIVWS AVRNMYVVAS ELARGHSKVK AQVCASETHS PNKKSEYGQI IKATRAALAC
AVAAALGFFS PLAMADNPVS YIDGTEHDLS TETSPISYSG TGQGTALSLE GLPTDKGGWQ
ATSGTGTDVV IETDGGGDIL SGSTRAIGTA VSLNKGATLN LTDAQITTTG IYTAGIDLKE
QSSMTLTGGI IQIGGNYGVL TLNGESKATL IGTEVKATTE NTSDLTSQEG STLRIEGGST
ITLTNGQVRV VGDTTYNSWL EVDGSAVSST GTDSTVIASN KGVLDITNST VTHDNAKGAA
IEAANASTVN ISGDNKSSMF IKSEGIGIKS ARSSVNIDGA TVEAKGDGIL MTTGGSTFYS
NISGLTVENA DVTSSDAAAL HVDKNTVIET PITLTDSTLT GPTAIKLDNA ATVEAKNTTL
NGNIEAGSTV SALSLAEKSS LQGSVNGLNS SLSLDDTSLW NMTDPSTVGN LTNDGGITLG
NASGSTGTLL TVDNTLTLQD GSQINATLDT ANSSPIIKAA NVTLDGTLNL SSTATFVAPE
TDEHFGSVTL IDSQTAITTD FDSVTLNADT SAMPDYLTIN AGVDANDNTN YELSTGLSWY
AGANSARAAH GTFTVDADST FTVTSELDET TANSNWGGSK LTKQGDGTLI LSNTGNDYGD
TEIVGGILAA KDAASLGTGD VTIAENATLA LSQGTLDNNV TGEGQIVKSG SDELIVTGDN
NYSGGTTISG GTLSAKDAAS LGSGDVDIAE NAKLELSQGT LDNNVTGGGQ IVKSGSDELI
VTGANDYSGG TTITGGTLTA DHADSLGSGD IDNSGVLQVG EGELKNTLFG SGSLVKTGTG
ELTLSGDNSY SGTTTITDGT LIAASVNALG SGDIDNSGVL QVGEGELKNT LFGSGSLVKT
GTGELTLNGD NDYSGGTTID DGVLIAASVN ALGSGDIDNS GVLQVGEGEL KNTLFGSGSL
VKTGTGELTL SGDNTYSGGT TISDGTLIAD HADSLGTGAV ANSGVLQVGE GELENTLSGS
GSLVKTGTGE LTLGGDNSYS GDTTIADGTL IAANVNALGS GNIDNSGTLM LDANGAFELA
NITTHSGATT ALAAGSTLDA GQLTQEDGST LSIDLGAATD DAVITADSVT LGGTLNVTGI
GSVTDSWTPE AYTYTLIDSD SAITSDFDDL TIAGMNREDV DFLTIDGKVD ETDNTNYDLT
ASLSWYADRD NATTDAHGTF TLSDPDGSFN VAATLTDVDD TLDPGSRWDG KSLTKEGAGT
LILSGDNDYS GGTTINEGTL VAASTTALGT GLVDNNATLV LDADGEVSAV GGITTHSGAT
TQLALGTSLD LGDSALIQQD GSTLNVELNS DSVQPLITGG SATLGGNLVV SDASLQARAS
DAEFQSFKLM DMDSDISGDF TSLTMNLTDQ PDYLTVTGTI NPEDASEYLL TEGLSWNATA
TSATPAHGTF TLGAGDSFEV TSVLGDKTGN GDWDGKSLTK LGAGKLTLSG ANTYTGDTNV
QEGTLWLSGD GSIGEMGSQQ AVNVASGATF GGSNGTTVNG KVTNEGTLVF GDSEETGAIF
TLNGDLINMG TMTSGSSSST PGNTLYVDGN YTGNGGSLYL NTVLGDDDSA TDKLVITGDA
SGTTDLYING IGDGAQTTNG IEVVDVGGVS TSDAFELKNE VNAGLYTYRL YWNESDNDWY
LASKAQSDDD DSGGDDTPSD GGDDGGNVTP PDDGGDGGNV TPPDDGGDGG DVTPPDHGGD
VAPQYRADIG AYMGNQWMAR NLQMQTLYDR EGSQYRNADG SVWARFKAGK AESEAVSGNI
DMDSNYSQFQ LGGDILAWGN GQQSFTVGVM ASYINADTDS TGNRGADGSQ FTSSANVDGY
NLGVYATWFA DAQTHSGAYV DSWYQYGFYN NSVESGDAGS ESYDSTANAV SLETGYRYDI
ALSNGNTVSL TPQAQVVWQN YSADSVKDNY GTRIDGQDGD SWTTRLGLRV DGKLYKGSRT
VIQPFAEANW LHTSDDVSVS FDDATVKQDL PANRAELKVG LQADIDKQWS VRAQVAGQTG
SNDFGDLNGS LNLRYNW
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