| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SeAg_B1877 |
|---|
| Symbol | topB |
|---|
| ID | 6794910 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salmonella enterica subsp. enterica serovar Agona str. SL483 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011149 |
|---|
| Strand | - |
|---|
| Start bp | 1834674 |
|---|
| End bp | 1836623 |
|---|
| Gene Length | 1950 bp |
|---|
| Protein Length | 649 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 642776107 |
|---|
| Product | DNA topoisomerase III |
|---|
| Protein accession | YP_002146741 |
|---|
| Protein GI | 197251464 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0550] Topoisomerase IA |
|---|
| TIGRFAM ID | [TIGR01056] DNA topoisomerase III, bacteria and conjugative plasmid |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.0000540839 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCGGTTGT TTATTGCCGA AAAACCGAGT CTGGGGCGCG CCATTGCGGA TGTGCTGCCA
AAACCGCACC GTAAAGGCGA TGGTTTTATT GAGTGCGGAA ACGGGCAGGT CGTCACCTGG
TGTATTGGTC ATTTGCTGGA ACAGGCGCAG CCGGATGCGT ATGACAGCCG TTATGCGCGC
TGGAATCTGG CTGACCTGCC TATCGTGCCG GAAAAATGGC AGCTTCAGCC TCGTCCTTCC
GTCACCAAAC AGCTCAATGT GATTAAGCGC TTTTTGCATC AAGCCGGTGA AATTATTCAC
GCCGGCGACC CGGATCGCGA AGGGCAGCTT CTGGTTGATG AAGTGCTGGA TTATCTCCAG
CTTCCTGCCG AAAAGCGCCA GCAGGTGCGG CGTTGTCTGA TAAACGACCT TAACCCGCAG
GCGGTCGAGC GTGCTATCGA CAGGCTGCGA GCGAACAGCG ACTTCGTGCC GCTGTGCGTC
TCCGCGCTGG CGCGAGCGCG AGCGGACTGG CTGTATGGCA TTAATATGAC CCGCGCTTAC
ACGATCCTGG GCCGTAATGC CGGCTATCAG GGCGTGTTAT CCGTGGGACG CGTGCAGACG
CCGGTACTGG GGCTGGTGGT GCGGCGAGAC GAAGAGATTG AGAACTTTGT CGCCAAAGAC
TTCTTTGAAG TGAAGGCGCA CATCGTTACG CCTGCCGACG AGCGTTTTAC CGCTATCTGG
CAGCCGAGCG AGGCGTGCGA ACCTTATCAG GATGAAGAGG GGCGCTTGCT TCATCGTCCG
CTGGCGGAGC ATGTAGTGAA CCGAATCAAC GGTCAGCCCG CGCTGGTAAC CAGTTATAAT
GATAAACGGG AATCAGAATC CGCGCCGCTG CCGTTTTCGC TCTCGGCGCT ACAGATTGAA
GCCGCCAAAC GCTTTGGCCT GAGCGCGCAA AACGTGCTTG ATATTTGTCA GAAGCTCTAT
GAAACCCACA AACTGATTAC CTATCCGCGT TCCGACTGCC GTTATCTGCC GGAAGAACAC
TTTGCCGGAC GGCAGGCGGT CATGAACGCG ATTAGCGTCC ACGCCCCGGA TTTACTGCCG
CAGTCTGTGG TTAATCCTGA TACGCGCAAT CGCTGCTGGG ATGACAAAAA AGTGGATGCG
CACCACGCGA TTATCCCGAC GGCGCGCAGT TCTTCTGTCC ATCTGACGGA AAACGAAGCG
AAAGTGTACA CCCTGATTGC GCGTCAGTAT CTGATGCAGT TCTGCCCGGA CGCGGTGTTT
CGTAAATGCG TTATTGAACT GGAAATCGCC AAAGGGAAAT TTGTCGCCAA AGCGCGTTTT
CTGGCGGAGG CCGGTTGGCG GACGTTACTG GGCAGTAAAG AGCGCGACGA GGAAAACGAC
GGTACGCCGC TGCCAGTTGT CGCCAAAGGT GATGAGTTGC TGTGTGAAAA GGGGGAAGTG
GTCGAACGCC AAACCCAGCC GCCGCGTCAT TTCACCGATG CGACATTGCT TTCCGCGATG
ACCGGAATTG CCCGCTTCGT GCAGGATAAA GATCTGAAAA AGATCCTGCG CGCGACCGAT
GGGCTGGGGA CGGAAGCCAC GCGCGCCGGG ATTATTGAGC TGCTGTTCAA ACGTAGCTTT
CTGACCAAAA AAGGGCGCTA CATTCATTCT ACCGATGCTG GCAAAGCGTT AATACATTCG
CTGCCGGAAA TGGCGGCCCG TCCAGATATG ACCGCGCACT GGGAATCTGT TTTGACGCAA
ATCAGCGAAA AGCAGTGCCG TTACCAGGAT TTCATGCAAC CGCTGGTCGA CACGTTATAT
CAGCTGATCG AGCAGGCTAA GCGCACGCCG GTGAAGCGCT TCAGAGGGAT AGTCGCGCCA
GGCGGCGGAG AAAAGAAAAA GAGCGCGCCG CGTAAGCGAG CGGGCAAAAA AAGCCCGCCT
GCTGAGGAGA CAGGCCGTCA GACCGAATAA
|
|---|
| Protein sequence | MRLFIAEKPS LGRAIADVLP KPHRKGDGFI ECGNGQVVTW CIGHLLEQAQ PDAYDSRYAR
WNLADLPIVP EKWQLQPRPS VTKQLNVIKR FLHQAGEIIH AGDPDREGQL LVDEVLDYLQ
LPAEKRQQVR RCLINDLNPQ AVERAIDRLR ANSDFVPLCV SALARARADW LYGINMTRAY
TILGRNAGYQ GVLSVGRVQT PVLGLVVRRD EEIENFVAKD FFEVKAHIVT PADERFTAIW
QPSEACEPYQ DEEGRLLHRP LAEHVVNRIN GQPALVTSYN DKRESESAPL PFSLSALQIE
AAKRFGLSAQ NVLDICQKLY ETHKLITYPR SDCRYLPEEH FAGRQAVMNA ISVHAPDLLP
QSVVNPDTRN RCWDDKKVDA HHAIIPTARS SSVHLTENEA KVYTLIARQY LMQFCPDAVF
RKCVIELEIA KGKFVAKARF LAEAGWRTLL GSKERDEEND GTPLPVVAKG DELLCEKGEV
VERQTQPPRH FTDATLLSAM TGIARFVQDK DLKKILRATD GLGTEATRAG IIELLFKRSF
LTKKGRYIHS TDAGKALIHS LPEMAARPDM TAHWESVLTQ ISEKQCRYQD FMQPLVDTLY
QLIEQAKRTP VKRFRGIVAP GGGEKKKSAP RKRAGKKSPP AEETGRQTE
|
|---|
| |