Gene SeAg_B1108 details

Gene Information

• Locus tag: SeAg_B1108
• Symbol: vasA
• ID: 6795782
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Salmonella enterica subsp. enterica serovar Agona str. SL483
• Kingdom: Bacteria
• Replicon accession: NC_011149
• Strand: -
• Start bp: 1108784
• End bp: 1110637
• Gene Length: 1854 bp
• Protein Length: 617 aa
• Translation table: 11
• GC content: 56%
• IMG OID: 642775375
• Product: type VI secretion protein, family
• Protein accession: YP_002146016
• Protein GI: 197250629
• COG category: [S] Function unknown
• COG ID: [COG3519] Uncharacterized protein conserved in bacteria
• TIGRFAM ID: [TIGR03359] type VI secretion protein, VC_A0110 family

Plasmid Coverage information

• Num covering plasmid clones: 28
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGAATTCG AAGAACGCTA TTACAGGCAG GAGTTGGATC ACCTGCGGCA GTTGAGCAAG 
CTGCTGGCGA CCGAAAAGCC GCATCTGGCC CGGTTTCTGG CAGAAAAAGA GGCCGATCCG 
GATATCGAGC GTTTGCTGGA GGGCGTGGCC TTTCTGACCG GCAATCTGCG CCAGAAAATC 
GAGGATGAGT TTCCGGAGCT GACGCACGGA CTGATCCGGA TGCTGTGGCC CAATTATCTG 
CGCCCGGTGC CGTCGATGAC GCTGATTGAA TATGCGCCGG ATATGGATAA AACCTCCGTG 
CCGGTACTGA TCCCCCGTAA TGAGCAGTTC ACAACCGGGG CGAAGGGGAC TCAGGGAAAC 
GCGGTATTGT CTGCGTATTC CGGCAATGAG CACGATGTAG CCCCGCCCTG TACGTTCACT 
CTTTGCCGGG ATATCTGGCT GTTACCCGTT CAACTGGATC AGGTTGAAAA TCGCAGTACG 
CCCCGCCACG GCATTATTGA TATTACGTTT GCCGTCGCAC CGGGCACTGA TTTTGCCACG 
CTGGATCTGA ACAGGCTGCG CTTCTGGCTG GGCAACGATG ATAACTATAC CCGCTACCAG 
CTTTATCTGT GGTTTTGTGA ATATTTACAG GGCGCAGAGT TGATGGCGGG CGGGCAGTCG 
ATCCCGATGC CTGAATTTAT GCTGAAAGCG GTGGGTTTTG AGTCAGAGGA CGCCATGCTG 
CCCTGGCCCG GTAATGTCCA CAGCGGCTAC CGTGTTCTCC AGGAGTTTTT CTGCTACGCC 
GACAGTTTTC TGTTTTTCGA TGCCTGTGGC ATTCCGGCAT TGCCAGACCG GTTGAAGGAG 
AACCGTTTCA CTCTGCGGCT ACGGTTTTCA CGCCCCTTAC CGGCAGATAT CCGGCTGCGG 
GATGATTCCC TGCGCTTATA TTGTGCGCCC GCCATTAATC TGTTTGCCCA CCATGCCGAA 
GCCATCACGC TGGATCATCA GCGGCAGGAT TACGCTCTGG TTCCCAGCCG TCATTTTCCG 
GATCATTACG ATATTTTTTC GGTTAACAGC GTGGTGAGTC AGACACAGGG GAAGCACAGA 
AAAGCGGATC TTGGACGGCC AGTGATCACA GAGGCCGCGC GCCACTGGCC TGCTTTTGAG 
AGTTTCCGCC ACCAGATGGA GTACAGCCGT AAGCGGGAAG TGGTCTACTG GCAGCACCGG 
ACCAGGACCT CGCTGTTTCA CCGGGGCTTT GATCATACCC TGGCTTTTAT TCATGCCGAT 
GGCAGCCTCC CGGATGCCTC ACTGCTTAAT AATGAAGTGG TTTCGGTATC GCTGACCTGC 
ACCAACCGGG AGTTGCCGGT ACAGCTACGG CCCGGCGATA TCACCGGTAC GACAGGTAAA 
AACGCGTCAG TGGCGTCATT TCGCAATATC ACCCGCCCCA CCAGACCGCT CTGGCCGGTG 
ATTGACGGCA GCCTGCACTG GTCGTTGCTG TCTGCCATGA ACCTGAATTA TCTGTCGTTG 
CTGGATGCTG ATGCGCTCAA ACAGGTTATC GCCAATTTTG ATCGCCACGC CATTCATCAT 
CCGCAGATGG CCCGTCTGTC ACAACAGAAG CTGGACGCCA TTGAACGGCT GGAAACTACG 
CCTGTTGATC GCCTGTTTAC CGGCATACCG GTGCGCGGGC TGGCGTCCAC CCTGTCCATT 
CATCCGGAGC CGTTTGTCTG CGAGGGTGAA ATGTATCTGC TGGGCGCGGT GCTGTCGCAT 
TTTCTGTCGC TGTACGCCAG CGTCAATTCG TTCCACATGC TGACCGTCGT TAATACGGAA 
AGCCAGGAGT CATGGAAATG GGCGGAAAGA ACCGGGCAAC ACCCGCTCAT CTGA 

 

Protein sequence

MEFEERYYRQ ELDHLRQLSK LLATEKPHLA RFLAEKEADP DIERLLEGVA FLTGNLRQKI 
EDEFPELTHG LIRMLWPNYL RPVPSMTLIE YAPDMDKTSV PVLIPRNEQF TTGAKGTQGN 
AVLSAYSGNE HDVAPPCTFT LCRDIWLLPV QLDQVENRST PRHGIIDITF AVAPGTDFAT 
LDLNRLRFWL GNDDNYTRYQ LYLWFCEYLQ GAELMAGGQS IPMPEFMLKA VGFESEDAML 
PWPGNVHSGY RVLQEFFCYA DSFLFFDACG IPALPDRLKE NRFTLRLRFS RPLPADIRLR 
DDSLRLYCAP AINLFAHHAE AITLDHQRQD YALVPSRHFP DHYDIFSVNS VVSQTQGKHR 
KADLGRPVIT EAARHWPAFE SFRHQMEYSR KREVVYWQHR TRTSLFHRGF DHTLAFIHAD 
GSLPDASLLN NEVVSVSLTC TNRELPVQLR PGDITGTTGK NASVASFRNI TRPTRPLWPV 
IDGSLHWSLL SAMNLNYLSL LDADALKQVI ANFDRHAIHH PQMARLSQQK LDAIERLETT 
PVDRLFTGIP VRGLASTLSI HPEPFVCEGE MYLLGAVLSH FLSLYASVNS FHMLTVVNTE 
SQESWKWAER TGQHPLI