Gene Gbem_4041 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagGbem_4041 
Symbol 
ID6780904 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameGeobacter bemidjiensis Bem 
KingdomBacteria 
Replicon accessionNC_011146 
Strand
Start bp4592364 
End bp4594223 
Gene Length1860 bp 
Protein Length619 aa 
Translation table11 
GC content61% 
IMG OID642770034 
ProductPAS/PAC sensor signal transduction histidine kinase 
Protein accessionYP_002140827 
Protein GI197120400 
COG category[T] Signal transduction mechanisms 
COG ID[COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system 
TIGRFAM ID[TIGR00229] PAS domain S-box 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAAAACG GGAGTCCCAC CGACAAACAG GCCCTGGAGC AGCAGTTGAC TGCCCTGCGC 
AGGGAAAACG AGGAGCTGGC CCAACAGGTC AAACGGCTGA TCAGGGCCGA AGGGAAGCTC
TACGAGTACC AGCAGGTGCT CGACCTCCAG TTGAACGAGT ACAAAGGGCT TTACGACCTG
AGCAGGAGGC TGAGCGGGAG CTTCTACATC CAGGGCCTGT TCCGCGAGAC CGTGCAGTAC
GTGGTCCAGC AGCTGGAGTA CGAACGGGCT ATCCTGCTCC GCCGCGAAGA AACGGTTACC
TACCGCGTCT TGGCCCTTGA CGGCTACTAC GATCCAAGCG AAAAAGAACA GGCCGCCGCC
ATTACCATGA AGTACGGCGC CCCCTGCCTC TCCCCCCTTC TAGCAGGCAG GGAGCATGTC
ACCTGCACCG CAACCTCGAC GGAACCCGGA AACGGATGCC GACGGCGCCT ACTGATGGAC
GAGTTCCTGG TATACCCCCT AGGCCACGAC GAGGTCCCCC ACGCCCTGCT GGTGGTCGGC
AACACCGCGA CCAATGCACC CTTTCACCGG CGGGTGCAGG AAAGCGACCA GGCGCTCCTC
AGCATGGGAA ACCTGGTCGG TCTCGTATCA TCCATTCTGG ATACCCACAT ATTTTTCGAA
CGAATGATGG AGGCCCGCGA GCAGGAACGG GTCGCCGAGG CGAAGTACCG CAGCCTTTTC
GAGAACGCGG CGGAGGGGAT CTTCCGCAGG ACCCCCGAGG GGAGGTACCT CGACGCGAAC
CCCGCCCTCG CGCACATGCT TGGCTATGCC TCTCCCGCGG AGCTGGTCGC CTCCATCACC
GACATCGGTA CCGAGGTCTA CGTGGACCCC GCCTCCTATG CGGAGATGCA GAGGGTGCTG
GCGGTCCACG GCAGGGCCGA AAGTTTCGAG ACGCAGATCT ACCGCAAGGA CGGCAGTGTG
ATCTGGGTAT CCCTGAGCCT GCGCGCAGTG CGGGACAGCG AGGGGAAGGT GCTCTTTTAC
GAGGGGATGT CCGAGGAGAT CACCAAGCGT AAGATTGCCG AGGCCGCGCT GCGCGAGAGC
GAGCAGAAGT ACCGCCAGTT GAGCGAGGCG CTGGAGCGGC GCGTGAAGCA GGCGGTCGAC
GAACTGCGCC AGAAGGACAA GATGCTGATC CTGCAGGGGC GGCAGGCGGT GATGGGGGAG
ATGCTGAGCA ACATCGCCCA CCAGTGGCGC CAGCCCCTGA ACATGCTGGC CTTGCTGGTC
CAGGACGTCC AGTTGACCCA CAGGCAAACC GGGCTCAGCG AAGAGTTCAT ATGTGAGAAC
GTCAGAAGGA GCATGGAGAT CATCCAGCAG ATGTCCCAAA CCATAGACGA TTTCAGGTAT
TTCTACCGCC CGGACCGGGA AAAACTTGAG TTCACGGTGA GCGAGCCTTT GGATAAGGCG
CTGGCCCTGT TGAATGGGAG CTTAAGGATA CACAGTATAG AGATCCAGGT CCTTAAAACC
GGCGAACCTT CAATCAAGGG ATATCTCGGA GAGTTCGTCC AGGTCCTGCT CAACATCCTG
ATCAACGCTC GCGACGCGCT CATCGCCAGC CGCGCCGCTT CGCCGCTCAT CACCGTCAGG
CTCTACGAGG AAGGCGGGGA AACGGTGGTC AGGATCGCTG ACAACGCCGG CGGCATCCCC
GAGGAGATCA AGGAGAAGAT CTTCGAACCC TACTTCACCA CCAAAGGGCC CGAGCAGGGA
ACCGGCATCG GGCTTTTCAT GTGCAAGACC ATCATCGAGA AGAGCATGAA CGGCAGGCTC
TGCGCCAGTA ACAGCGGCGA GGGAGCCGAG TTCGTCATCA CCGTCCCCAA AACTCCCTGA
 
Protein sequence
MKNGSPTDKQ ALEQQLTALR RENEELAQQV KRLIRAEGKL YEYQQVLDLQ LNEYKGLYDL 
SRRLSGSFYI QGLFRETVQY VVQQLEYERA ILLRREETVT YRVLALDGYY DPSEKEQAAA
ITMKYGAPCL SPLLAGREHV TCTATSTEPG NGCRRRLLMD EFLVYPLGHD EVPHALLVVG
NTATNAPFHR RVQESDQALL SMGNLVGLVS SILDTHIFFE RMMEAREQER VAEAKYRSLF
ENAAEGIFRR TPEGRYLDAN PALAHMLGYA SPAELVASIT DIGTEVYVDP ASYAEMQRVL
AVHGRAESFE TQIYRKDGSV IWVSLSLRAV RDSEGKVLFY EGMSEEITKR KIAEAALRES
EQKYRQLSEA LERRVKQAVD ELRQKDKMLI LQGRQAVMGE MLSNIAHQWR QPLNMLALLV
QDVQLTHRQT GLSEEFICEN VRRSMEIIQQ MSQTIDDFRY FYRPDREKLE FTVSEPLDKA
LALLNGSLRI HSIEIQVLKT GEPSIKGYLG EFVQVLLNIL INARDALIAS RAASPLITVR
LYEEGGETVV RIADNAGGIP EEIKEKIFEP YFTTKGPEQG TGIGLFMCKT IIEKSMNGRL
CASNSGEGAE FVITVPKTP