Gene Gbem_3961 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagGbem_3961 
SymboluvrC 
ID6780825 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameGeobacter bemidjiensis Bem 
KingdomBacteria 
Replicon accessionNC_011146 
Strand
Start bp4497671 
End bp4499542 
Gene Length1872 bp 
Protein Length623 aa 
Translation table11 
GC content64% 
IMG OID642769956 
Productexcinuclease ABC subunit C 
Protein accessionYP_002140749 
Protein GI197120322 
COG category[L] Replication, recombination and repair 
COG ID[COG0322] Nuclease subunit of the excinuclease complex 
TIGRFAM ID[TIGR00194] excinuclease ABC, C subunit 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00581214 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGATTACTC AGGCGATGAT CGAGAACTTC CCCCCCTCCC CCGGCGTCTA CCTCATGAAG 
AGCGCCGACG ACACCGTCAT CTACGTCGGC AAAGCGCGCA ACCTCAAGAA AAGGGTCCGC
TCCTACGCGG GAGACACCCG CGACTCCCGG ATACACATCC GCTTCATGGT GCAACTGGTC
CATTCGGTCG ACTACCTGGT CACCGACACG GAGAAGGAAG CGCTCATCCT CGAAAACACG
CTGATCAAGC AGCACCGCCC CAAGTACAAC ATCAACCTGC GCGACGACAA GACCTACTTC
TCGCTGCGCA TGGACATGAA GGAACAGTTC CCGCGCCTCT CCATCGTCCG GAAGATCCCC
TCCGATGGCG CTCGCTACTT CGGCCCCTAC GCCTCTGCCA CCGCCGCCAA AGAGGTGCTG
AAACAGCTCT ACAAGATGTT CCCGCTGCGC CACTACCCCC TTGCCACCTG CATGGCCAGA
AAGCGCCCCT GCCTGTACCA CCAGATCAAG CAGTGCTCCG CACCTTGCTG CGGCCTCATC
TCCGCCGCGG AGTATGCGGC GCTGGCCCAT GGGGCCGCAC TCTTCCTGGA GGGGAAGAAC
ACCGAGGTGG CGCGGCTCTA CCGGTCCAAG ATGAACCTGG CCGCCGAGCA GATGCGCTAC
GAGGACGCGG CCCGCTACCG GGACCTGCTG CGCGCCATCG AGGTGACGGT CGAGCGGCAG
AAGATGGTGG CACAAAGCGA CGACAGCGAC GTTTTCGGCT TGCACCGCGA GGCGGACCGG
ATGCAGATCG CCCTTTTGCA CATCCGCGGC GGGACCCTGA CCGGCGGGCG CAGCTTCCTC
TTCGACTGGG AACTGGAGAC CGAGGAGGGA CTCGCCTCCT TCCTGAACGA GTACTACGAC
CTGGACGCGC CTATCCCCCC CCAGGTGCTG ATACCGGTTC CCATAGCCGA GCCCGCCGCG
CTGGAGGAGC TTCTTTCCGA AAAAGCAGGG AAGAAGGTGA CCATCGCAGT GCCGCAGCGC
GGCCCGAAAC TCGAGATGGT GAAACTTGCC GGGAAGAACG CCGAGACCGC TGCCCAGGAA
CGCTTGGCGC GGGAGAGTTC CTCCGCGACG CTTCTGACCG AACTGGCCGA GAAACTGAAC
CTGCCGCACC CCCCGAGAAG GATCGAGTGC TACGACATCT CCAACATCCA AGGGGAGATG
GCGGTCGGGA GCCGGGTGGT CTTCATCGAC GGCAGGGCCG ACAAGTCCCT GTACCGGCGC
TACCGGATCA AAGGGGTGCT GCAGTCGGAC GACTTCGCCA TGATGCGCGA GGTGCTCTCG
CGCAGGTTCA AGGCCGAAAG CAGCGAAGAG AAGCCGGACC TGATCGTGGT CGACGGGGGT
CTCGGGCAGC TGGGCGTCTT GAACGCGGTG CTCGACGAGC TTGAGGTCAC CGGGGTCGAG
GCTGCGGGGC TCGCCAAAAG CCGCGTGGCC CGCGACATGG AGAGCGAAGA GATCGAGCGC
AGCGACGAGC GCGTGTTCCG CCCCGGCCGG AAGAATGCGA TTGCCCTCAG GCAGAGTTCC
GCCCCGCTAC TGCTCCTGGT GCGCATCAGA GACGAGGCGC ACCGCTTCGC CGTCACCTAC
CACAAGGACG TGCGCAGCAA GGTCCTGACC GGTTCCGAGC TGGACGGAGT CGCGGGTATC
GGCGAGAAGA GGAAGAAGGC GCTGTTGAAG CATTTCGGGA GTCTAAAACG GGTGAAAGAG
GCGACGCTGG AAGAGCTGAA GGGCGCGCCG GGGATGACCG AAAGTGCGGC GAAGGCGTTG
GTGGAACGTC TGCATGGCAG CCCCCTCCCC AACCCTCCCC CTCCTGGGGA GGGAGCCATG
GACCGCAAAT AA
 
Protein sequence
MITQAMIENF PPSPGVYLMK SADDTVIYVG KARNLKKRVR SYAGDTRDSR IHIRFMVQLV 
HSVDYLVTDT EKEALILENT LIKQHRPKYN INLRDDKTYF SLRMDMKEQF PRLSIVRKIP
SDGARYFGPY ASATAAKEVL KQLYKMFPLR HYPLATCMAR KRPCLYHQIK QCSAPCCGLI
SAAEYAALAH GAALFLEGKN TEVARLYRSK MNLAAEQMRY EDAARYRDLL RAIEVTVERQ
KMVAQSDDSD VFGLHREADR MQIALLHIRG GTLTGGRSFL FDWELETEEG LASFLNEYYD
LDAPIPPQVL IPVPIAEPAA LEELLSEKAG KKVTIAVPQR GPKLEMVKLA GKNAETAAQE
RLARESSSAT LLTELAEKLN LPHPPRRIEC YDISNIQGEM AVGSRVVFID GRADKSLYRR
YRIKGVLQSD DFAMMREVLS RRFKAESSEE KPDLIVVDGG LGQLGVLNAV LDELEVTGVE
AAGLAKSRVA RDMESEEIER SDERVFRPGR KNAIALRQSS APLLLLVRIR DEAHRFAVTY
HKDVRSKVLT GSELDGVAGI GEKRKKALLK HFGSLKRVKE ATLEELKGAP GMTESAAKAL
VERLHGSPLP NPPPPGEGAM DRK