| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Gbem_3802 |
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| Symbol | |
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| ID | 6780666 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Geobacter bemidjiensis Bem |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011146 |
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| Strand | - |
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| Start bp | 4341406 |
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| End bp | 4343685 |
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| Gene Length | 2280 bp |
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| Protein Length | 759 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 642769797 |
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| Product | putative sigma54 specific transcriptional regulator |
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| Protein accession | YP_002140590 |
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| Protein GI | 197120163 |
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| COG category | [K] Transcription
[R] General function prediction only
[T] Signal transduction mechanisms |
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| COG ID | [COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains
[COG4624] Iron only hydrogenase large subunit, C-terminal domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTACCCCA TTGTCACCAT CACCGACCAT TGCCGCAAAT GCTACTCCTG CGTCCGAAGC
TGCCCGGTAA AGGCGATCAA GGTGGAGAAG AGCTACACCG AGATCATCGC CGAGCGCTGC
ATCGGCTGCG GCAACTGCAT GAGCCACTGC CCCCAGCACG CTAAGGTGAT CGCCGATAAC
GTTGCGGTAA CCAACGAGCA CCTTTCTTCG GGAGAGCCGG TTGTCGCGGT GCTCGGCTGC
TCGTTCCCTT CCTTTTTCCA CCACTGCTCG CCGGGCCAAC TGTCGGCCGG GCTGAGGCGG
CTTGGATTTG TCGAGGTGCA CGAGGGGGCC AGCGGGGTGG AACTCATCGC CGGCGAATAC
CGCGACGCCA TCGACAATGC GAAGCTGCCG CTCATCTCCT CCCACTGCCC GGCCGTCGTC
GATCTGGTCG AGCGGCATTA CCCGCAGTTG ATCGAGAACC TGGTGGGGGT GGTGACGCAC
ATGGTGGCCA TGGGGCGCTT CCTGAAACAG GTCTGGGAGG GGAAGGCCAA GGTCATCTAC
ATCAGCTCGT GCATCGCCGG CAAGTTCGAG GTGCAGGCGG AGCAGACCAA GGGGGCAGTG
GACGTCCTCC TCACCTACCG CGAGCTGGAG TCCATCTTCA AGGAGCGGGG GATCGATCTC
GCCACGCTGG AGGAGGAGCC TTTAGACGGC AAGGAGCCGC ACATGGGAAG GATCTTCCCC
CTGTCGCAAG GTTCCTTCCA GGCCTTCGGC ATAGAGGCGG ACCCGCTCGA CACCGAGGTG
GTCACCGCCG AAGGTGAAGT CAACGTCATG GGGATCATCA AGGACCTCGC GGCGGGGAGG
ATCAGCCCGA AGCTCGTCGA TCTCCGTTTC TGCTACGACG GTTGCATCGG AGGCCCGGGG
CGGAACCAGG CGCTGACCGA ATTCTCCCGG CGCAACCTGG TCATCTCCCA CCACCGGAAG
AGGATCCCCT ATCGCACCTC GCAGGCCTAT CTGGACGCAG CTCCGGTGTC GCTTTCGCGC
ACCTTCGCCG ACAAGTACGC CAAGCTCCCC ACCCCCAAGG CGGGGGACGT GAAGAAGATC
TTGCACGCCA CCAACAAGTT CACCCAGAAG GACGAGCTGA ACTGCCGCGC CTGCGGCTAC
CGGACCTGCC GCGAGTACGC CGTCGCCGTA TTCCAGGGAC TTGCCGACCT GGAGATGTGC
CTGCCGCACA ACCTGCAACA GCTGGAGGAG GAACGCGGGA GGCTGATCGA GAAGTACGAG
CTGGCGAAAA GGGAGCTCGA CCGCTACGGC GACGAGTTCA TCGTGGGGAG CGACCGCAAC
ACGCTGGAGG TGCTGGACCA GATCAAGCAG GTGGGACCGA CGCCGACCAC CGTCCTCGTT
CGCGGCGAAT CCGGGACCGG CAAGGAGCTT GCGGCGCGCG CCATTCACCG CTACTCCAAG
AGAAACGACA AGCCGCTGGT CACGGTCAAC TGCACCACCA TCACCGACTC GCTCCTGGAG
AGTGAACTCT TCGGCCACAA GAAGGGTTCG TTCACCGGTG CCATCATGGA AAAAAAGGGT
CTCTTCGAGG CGGCGCACGG TGGCACCATC TTCCTCGACG AGATCGGGGA CATCACGCCT
AAGCTGCAGG CGGAGTTGTT GCGGGTGCTG GACTTGGGCG AGGTGAGGCC GGTCGGGGGG
ACTGCCGCGA AAAGGGTCGA TGTCCGTCTT ATAGCGGCAA CTAATAAATC GCTGGAGGAC
GGGGTCCGCG AAGGTTGGTT CCGCGAGGAC CTCTATTACC GTCTCAACGT CTTCTCCATC
ACCATGCCCC CCTTGCGGGA AAGGGTGGAG TCGATCCCGC AGCTGGCGCA CTATTTCCTG
GAAAAGGCGC GCAAGAAACT CAACAAGCAC ATCGACGGCA TCGAGGAACG GGCGGTCAGC
GCCATGGTGA AATACCCCTG GCCCGGCAAC ATCCGGGAGA TGCAGAACGT GATTGAGCGC
GCCGCCGTGC TCACCCACGA CGAGATCATC AAGCTGGGGA ACCTCCCGCT TGCCTTCGCC
GAAAGCTACG CCGAGGAGGC CGAGGACGTC TTCGACCTGC GCTCCTTCAA AAAGGAGCGG
GAACCCCATG TGCTGCGGGT CGAGAAGAAG CTGATCCAGC GATATCTTGC CGATGCGGGT
GGGAATGTGT CAAAAGCGGC ACAACTGGCC AACATCCCGA GGCGCACTTT TTACCGCCTT
TTGGCGAAAC ACGGGCTCAA AGGTCGCACC ATAAGGGCGA GGGAGGAAGC CGAGGATTAG
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| Protein sequence | MYPIVTITDH CRKCYSCVRS CPVKAIKVEK SYTEIIAERC IGCGNCMSHC PQHAKVIADN
VAVTNEHLSS GEPVVAVLGC SFPSFFHHCS PGQLSAGLRR LGFVEVHEGA SGVELIAGEY
RDAIDNAKLP LISSHCPAVV DLVERHYPQL IENLVGVVTH MVAMGRFLKQ VWEGKAKVIY
ISSCIAGKFE VQAEQTKGAV DVLLTYRELE SIFKERGIDL ATLEEEPLDG KEPHMGRIFP
LSQGSFQAFG IEADPLDTEV VTAEGEVNVM GIIKDLAAGR ISPKLVDLRF CYDGCIGGPG
RNQALTEFSR RNLVISHHRK RIPYRTSQAY LDAAPVSLSR TFADKYAKLP TPKAGDVKKI
LHATNKFTQK DELNCRACGY RTCREYAVAV FQGLADLEMC LPHNLQQLEE ERGRLIEKYE
LAKRELDRYG DEFIVGSDRN TLEVLDQIKQ VGPTPTTVLV RGESGTGKEL AARAIHRYSK
RNDKPLVTVN CTTITDSLLE SELFGHKKGS FTGAIMEKKG LFEAAHGGTI FLDEIGDITP
KLQAELLRVL DLGEVRPVGG TAAKRVDVRL IAATNKSLED GVREGWFRED LYYRLNVFSI
TMPPLRERVE SIPQLAHYFL EKARKKLNKH IDGIEERAVS AMVKYPWPGN IREMQNVIER
AAVLTHDEII KLGNLPLAFA ESYAEEAEDV FDLRSFKKER EPHVLRVEKK LIQRYLADAG
GNVSKAAQLA NIPRRTFYRL LAKHGLKGRT IRAREEAED
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