| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Gbem_3747 |
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| Symbol | |
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| ID | 6780611 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Geobacter bemidjiensis Bem |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011146 |
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| Strand | - |
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| Start bp | 4280474 |
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| End bp | 4283491 |
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| Gene Length | 3018 bp |
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| Protein Length | 1005 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 642769742 |
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| Product | TPR repeat-containing protein |
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| Protein accession | YP_002140535 |
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| Protein GI | 197120108 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[N] Cell motility
[R] General function prediction only
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0457] FOG: TPR repeat
[COG0859] ADP-heptose:LPS heptosyltransferase
[COG3063] Tfp pilus assembly protein PilF |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGACCGAT ACGCGCAACT GAACCAGGCG CTGAGCGAGA ACCGGGCGGA GCTGGCACAA
GATATTTGCC ACGACCTTTT GCGCGCGGAG CCGGAGAACG TGGAGCTCTT GACGCTGGTG
GGCCTTCTCG CCTACCGGCG GGGTGATCTG GAGGAGGCGC TGCAGGCCTT TTCCCGAGCC
GCGTTCCTGC AACCGGAAAG CGCCGAGCTG CGCAACAACG TAGGGGTGGC CTACCAGGAT
CTCGACTGCC ACGACAGCGC GGTGCTCCAC TTCCGGGAGG CCCTCTCGCT CAGGGGAGAG
TACCCCGAAG CCCGCTGCAA CCTGGCGACC GCCCTTTTGC ACCTGGGGGA GGCCGAGGAG
GCGATCCGCA ACTACTGCGA CGCCATCGCC GCCGCCCCCG GTTATGCTGA CGCCTATCAC
CTCCTCGGCA ACGCGCTCCG CCGCCAGGGG GAGTGGGAAG GGGCGGTGCA GTGTTACCAA
AAGGCGCTCG AGCTCGATCC CGCCAACCTG AAGACGCTGG TCAACCTGGG AGGCTCCCTC
TTCACCCTGA ACCGGTTCGA CGAGGCGATC GCGGCCCAGC GCCGGGCGCT TTCGATCGAC
CCGGACCACG TCGACGCGCA CTGGAACCTG GCCTTGGTGC TCCTGACCAC CGGCAATTAC
CAAGAGGGGT TTGCCGAGTA CCAGTGGCGC CTAAAGGACC CCGCCGCCGG TTTCCCGGAG
AGCTGCGCCG GGAAGAAGCC GTGGGACGGC TCCGCGCTTT GCGGGCGCAC GCTTCTTTTG
CGCTGCGAGC AGGGGTTCGG CGACACCATC CAGTTCTTCC GCTACGCCCA GTGGCTTTCG
CGCCGGGGGG AGCGGGTGGC GCTTGAGTGC CGCCGTGAGC TCCTGCCGCT TTTAGCAATC
CAGGAGCCGG CGCTAACCTG CTTCGCCGCC GGCGACCCTC CCCCTTCTTT TGACTGCTTC
GCCTACCTGA TGAGCCTGCC GCACCTCTTG GGGACCTGCG TCGAGACCAT ACCGCCGCAA
GAACCGCCGC TTCGTGCCGA CCCCGAGCGG GCCGCTTGCT GGCGCGACTG GATCCCAGGG
GGAAGCACGA AGGTGGGGGT GGTCTGGGCC GGGAGCGCCG GCTACCGAAA CGACCGCTAC
CGTTCGCTGC CGGCGCGGGC GCTGGCATCC CTCGCCGGCA TCCCCGGGGT CAGGCTCTAC
AACCTGCAGC TTCCCGCAGC CGCGGACGAC CTAGCCGCCA TCGGGGAGAT CTGCGACCTG
ACCGGCCGCA TCGGGGATTT CTCCGACACC GCCGCGCTCA TCGAAGAGCT GGACCTGGTG
GTCTCGGTGG ATACCGCCGT GGCGCACCTG GCCGCGGCCA TGGGAAAGCC GGTGTGGCTG
CTGCTCCCCT TCTCCTGCGA ATGGCGCTGG CTTTCCGGGC GCAGCGATTC CCCCTGGTAT
CCCTCGGTTG CCATCTACCG TCAGCCGTCC TTAGGGGACT GGGAGGGGGT TATCGCGGCG
GTGGCTGCCG ACCTCGCGGC CTGGCCCGCG CGCGCTCAAG CCGAAGCGCC CCGCTCCCCC
GCACCGGCCC CGCTCAAGGC GGCGCCCAGG GGGGAAGACC CGAACCTGGA GTTCCGCCGG
GCCAACGCCC TGCGCGCCGA AGGCGACCTT GCCGGCGCAG TCGCGCTCTA CCGGTGCCTG
CTGGCGCGGC TCCCCGCATG CGCCGAAATC CACAACAACC TGGGGCTCGC GCTGCAGGAC
CAGGGGCTCG ACCCTGAAGC GGAACGGAGC TTCAGGCGGG CCCTGGAACT GAAACCGGAT
CTCGCCGACG CCCAAAACAA CCTGGGGACC CTCCTGGTCG CGCGGGGCGA GCACGACGAG
GCGCTCCCCT TTTTCGAGAG GGCGCTGGAG TTGCGCGGCG ACTACCTCCC CGCCTACGTG
AACCTGGGTT CCTGCCTGCA GGTGCTGGAA GAGCCGGAGC GCGCCGTCGA GCTCTACCGC
CGCGCCATCG CGCTCGAACC CGGCTTTTTC AAGGCGCGCA TCAACCTCGG CACCGCCTAC
CAGGACCTGA TGCAGCCCGA AAAGGCGATC GAGACGTACC GGGAGCTCCT GGAGCTTGCC
CCGGAGCACC CGGAGGCCCA CTGGAACCTC GCATTGAGCC TTTTGTCGGT AGGCGATTTC
AAGTGGGGGT GGGAGGAGTA CGAGTGGCGC CTGGCTACCG GGGAATCCAC CCTCTCCCCG
CTTCCCTACT GGCGGGGGGA GGAGCTCTCC GGCCGGAGCA TCCTGGTCGA GTGCGAGCAG
GGGCTGGGAG ACACGCTGCA GTTCGTCCGC TACCTTACCC TGCTCGCCAA GCGCGGCGGG
AAGGTGCTGC TCAAGTGCCA GAACGCCGGG CTCAAACCGC TGCTGGAGCG GGTCCCCGGG
GTGGCGACTG TCGTGGTTCC CGGCGAGGAG CCGCCCCGCT GCTCTTTCCG GGTAAAGCTC
TTGAGCCTGC CGTACCTTTT CGGCACGACC TTGGAGGCCA TGCCTGAATG GCACCCTTAC
CTCCTTGCCG ACCCGCGCCG CGGGGCCCTT TGGGAGCTGT TGCTCGATCA GGGAAGCGAC
CTCAAGGTGG GGCTCGTCTG GCGGGGAGGG CCGCTTCCTA GAAACCGCGC CTGCCCCTTC
GGCGAATTCG CCCCTTTGGG CGACCTGCAG GGGGTCGGCT GGTTTTCGCT GCAGTTGGGC
GAGGCGCCCG ACCCGGGCGT CCTGGAGGCG GCAGACCTGG CGCCGCAGAT AAAGGATTTC
GGGGATTCTG CGGCAATCCT CTCCGGGCTG GACCTGCTGC TGACGGTGGA CACGGCGGCA
GCGCACCTGG CGGGAGGGAT GGGGGTGCCG GTGTGGCTTT TACTCCCCTT CTCCTGCGAC
TGGCGCTGGA TGTCCGGGCG GGAGGACTCC CCCTGGTACC CGACGCTGCG CATCTTCAGG
CAGGGGCGCC CGGGCGACTG GCCGGGGGTG ATGGGGCGGG TCCGCGAGGC GCTGGAGGAG
ATGCTGAGGC GTCGATAA
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| Protein sequence | MDRYAQLNQA LSENRAELAQ DICHDLLRAE PENVELLTLV GLLAYRRGDL EEALQAFSRA
AFLQPESAEL RNNVGVAYQD LDCHDSAVLH FREALSLRGE YPEARCNLAT ALLHLGEAEE
AIRNYCDAIA AAPGYADAYH LLGNALRRQG EWEGAVQCYQ KALELDPANL KTLVNLGGSL
FTLNRFDEAI AAQRRALSID PDHVDAHWNL ALVLLTTGNY QEGFAEYQWR LKDPAAGFPE
SCAGKKPWDG SALCGRTLLL RCEQGFGDTI QFFRYAQWLS RRGERVALEC RRELLPLLAI
QEPALTCFAA GDPPPSFDCF AYLMSLPHLL GTCVETIPPQ EPPLRADPER AACWRDWIPG
GSTKVGVVWA GSAGYRNDRY RSLPARALAS LAGIPGVRLY NLQLPAAADD LAAIGEICDL
TGRIGDFSDT AALIEELDLV VSVDTAVAHL AAAMGKPVWL LLPFSCEWRW LSGRSDSPWY
PSVAIYRQPS LGDWEGVIAA VAADLAAWPA RAQAEAPRSP APAPLKAAPR GEDPNLEFRR
ANALRAEGDL AGAVALYRCL LARLPACAEI HNNLGLALQD QGLDPEAERS FRRALELKPD
LADAQNNLGT LLVARGEHDE ALPFFERALE LRGDYLPAYV NLGSCLQVLE EPERAVELYR
RAIALEPGFF KARINLGTAY QDLMQPEKAI ETYRELLELA PEHPEAHWNL ALSLLSVGDF
KWGWEEYEWR LATGESTLSP LPYWRGEELS GRSILVECEQ GLGDTLQFVR YLTLLAKRGG
KVLLKCQNAG LKPLLERVPG VATVVVPGEE PPRCSFRVKL LSLPYLFGTT LEAMPEWHPY
LLADPRRGAL WELLLDQGSD LKVGLVWRGG PLPRNRACPF GEFAPLGDLQ GVGWFSLQLG
EAPDPGVLEA ADLAPQIKDF GDSAAILSGL DLLLTVDTAA AHLAGGMGVP VWLLLPFSCD
WRWMSGREDS PWYPTLRIFR QGRPGDWPGV MGRVREALEE MLRRR
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