| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Gbem_3597 |
|---|
| Symbol | |
|---|
| ID | 6780461 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Geobacter bemidjiensis Bem |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011146 |
|---|
| Strand | - |
|---|
| Start bp | 4113896 |
|---|
| End bp | 4115671 |
|---|
| Gene Length | 1776 bp |
|---|
| Protein Length | 591 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 642769592 |
|---|
| Product | flavocytochrome c |
|---|
| Protein accession | YP_002140385 |
|---|
| Protein GI | 197119958 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1053] Succinate dehydrogenase/fumarate reductase, flavoprotein subunit |
|---|
| TIGRFAM ID | [TIGR01813] flavocytochrome c |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGACTTT CGAGGTTCGG CTTTTTGATG GCGGCAATGA TGGTGGTGGC GTCGGCGACG
GCACTGTGGG GCGGTAACGC GGAGAATCTG GCAAAAGCCC ACGTGGGCAA AGCGACTTGT
GCCGACTGCC ACGGCAGCGC GAAGAAGGTC GTGGTGGATG ACTCGGAAGC CGCCGTGAAC
GCCAAGTGCA TCAATTGCCA CGGAACGCTG GCCGAATTGG GGAAGAATTC CCACGAAGAG
GTTAACCCCC ATAAGTCGCA CCTGGGAGAG ATTAACTGTA CCGCCTGCCA TCATGGCCAC
ACGGCTTCGT GGGCTTACTG TATGAACTGC CATGCTTTCG ATATGAAGAT TCCCGGTGGC
GGGGCGACGG CTCACAAGTC CGCCGCGCCT GTTTCGACCG CCAAACGTAA ACCGGTCAAG
CGCACCGAAC AGGCCGACGT TGTGGTCATA GGCGCCGGCG CGGCAGGCTT TACCGCGGCC
ATCACCGCGC ATGATGCCGG CGCCAAGGTG GTCATTATCG AGAAGCAGCC CATCACCGGC
GGCAACAGCA TGCTGGCGGC CGGCGGCATG AACGCCGCTG AGACGTCGGT CCAGAAGGAA
AAGGGAATCG CCGACTCCGT CGACCTCATG TACAAGGACA CCATGACCGG AGGGGGGAAT
CTCAACGATC CGGCCCTAGC CATGGTGCTT GCCAAGAATT CCGCCTCGTC CGTTGACTGG
CTCACCGGGC TCGGCGCCGA CCTGAGCGAC GTAGGGCGCA TGGGGGGCGC CAGCGTCAAC
CGCACTCATC GTCCCAAGGG CGGCTCAGCG GTGGGCGCGC AGGTCATCGA CGTTCTACGC
AGAAACGCAG CGCAGCGCAA GATCGACACC CGCGTCAACA GCAAGGTGGT CAAAATCGTT
GAAGACGGTA AGGGGAGGGT GACCGGAGTC CAGGTGGAAG GAAAACACAG CGGCCTTTAC
ACCATCAAGG CAAAGGCCGT GATCATCGCT GCGGGTGGAT TCTCGGCCAA CGCAGAGAAA
GTCGCCTACC TTCGACCGGA ATACAAAGGG ATGACCACCT CCAACCAGCC GGGTGCGACC
GGCGACGGCA TCGATCTGGG CGCTGCTGCC GGCGCAGAAC TGAAGGACAT GAAGGAGATC
CAGATTCATC CCACCGTCGC TGCCGCAAGC CGTACCCTGA TCACCGAGGC GGTGCGCGGC
AATGGCGCCA TCCTGGTGAA CCACGAAGGA AAGCGCTTCG TTAACGAATT GACCACCCGC
GACAAGGCAT CCGCCGCCAT ATTGGCCCAG TCCGGCAAGT CCGCCTATCT CGTCTTCGAC
GAAGGGGTAA GGAAGAGCCT CAAGCAGATC GACGGCTATT TCCATCTGAA CCTTGTGCAG
GAAGGGGCCA GCATCCAGGA ACTCGCCGAC AAGATCAAGA TGCCGGCCGG GACGCTGGAG
GCGACCATTG CCGCCTACAA TAAGGCGTAC GAGGCGAAGA ACGATCCCGA ATTCAAGCGC
GCCGACCTGC CGCGACCGCT TCAAACCGCC AAGTACTACG CCATCGAGGT GAAACCGGGG
GTGCATTACA CCATGGGTGG GCTCAAGATC ACCACGGATA GCGAGGTGAT AGCCAAGGAT
GGCAAACCGA TCAAGGGGCT TTTCGCCGCA GGAGAGGGTA CTGGCGGGGT TCATGGCAAG
AACCGGCTGG GTGGAAACTC CATCTCGCAG ACCATCACCT TCGGCAGGAT AGCGGGGGCA
AACGCAGCCA AGGTCGCCAA AACAGCTAGC CGCTAG
|
|---|
| Protein sequence | MRLSRFGFLM AAMMVVASAT ALWGGNAENL AKAHVGKATC ADCHGSAKKV VVDDSEAAVN
AKCINCHGTL AELGKNSHEE VNPHKSHLGE INCTACHHGH TASWAYCMNC HAFDMKIPGG
GATAHKSAAP VSTAKRKPVK RTEQADVVVI GAGAAGFTAA ITAHDAGAKV VIIEKQPITG
GNSMLAAGGM NAAETSVQKE KGIADSVDLM YKDTMTGGGN LNDPALAMVL AKNSASSVDW
LTGLGADLSD VGRMGGASVN RTHRPKGGSA VGAQVIDVLR RNAAQRKIDT RVNSKVVKIV
EDGKGRVTGV QVEGKHSGLY TIKAKAVIIA AGGFSANAEK VAYLRPEYKG MTTSNQPGAT
GDGIDLGAAA GAELKDMKEI QIHPTVAAAS RTLITEAVRG NGAILVNHEG KRFVNELTTR
DKASAAILAQ SGKSAYLVFD EGVRKSLKQI DGYFHLNLVQ EGASIQELAD KIKMPAGTLE
ATIAAYNKAY EAKNDPEFKR ADLPRPLQTA KYYAIEVKPG VHYTMGGLKI TTDSEVIAKD
GKPIKGLFAA GEGTGGVHGK NRLGGNSISQ TITFGRIAGA NAAKVAKTAS R
|
|---|
| |