Gene Gbem_3557 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagGbem_3557 
Symbol 
ID6780420 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameGeobacter bemidjiensis Bem 
KingdomBacteria 
Replicon accessionNC_011146 
Strand
Start bp4071670 
End bp4072563 
Gene Length894 bp 
Protein Length297 aa 
Translation table11 
GC content62% 
IMG OID642769551 
Productpseudouridine synthase, RluA family 
Protein accessionYP_002140345 
Protein GI197119918 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0564] Pseudouridylate synthases, 23S RNA-specific 
TIGRFAM ID[TIGR00005] pseudouridine synthase, RluA family 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGATATTGA CGGCAAGGGT AGATGCAGAA CTAGCAGGGA CACGATTGGA CGACGCGGCG 
AAGACGCTTT TTCCGCAGTA CTCGAAGGGC GAGATCCGGC GCATCATCGA CTGGGGCGGT
TGTTACCTCT CGCAGACGCT GGTGCGGGTG GCTTCTCGCA CCGTGAAGGA GGGGGAGGAG
ATCGCCCTCG GGATCATGGA GGCCGAGCGC TGCATCGAGC TCGCCTATAA AAAGGAAGAG
CTTCTCTACG AGGACAAGGA TTTCCTGGCG GTCTACAAGG CGGCTGGTTT CAACAGCCAG
CGCACCCCGT ACCAGTTGAA GGGTACGGTG GAGTACGCTG TGGAATGCTA CATGAAGAGC
ATCGGGCTCA GGGATCCGTC GCGCGTGGTG CACCGACTGG ATCGCGGCAC GAGCGGCGTG
ATGTTTTTCC CCAAGCACAA GCAGGCCGCG ACCCTGATCT CGAACCTGCT CAAAGACGGC
AAGGTGCAAA AGACCTATTG GGCGCTGGTG GCGGGTTCGC CGGACCAGCA GAGCTGGAAG
GTGGACGCGC CGCTGGGGAA GGTGAGCAAG TTCAAGTACG GAGTAGCCCT GAATGGGAAG
CCGGCGAGGA CGCTGTTCCG GGTGGTCGGC GAGGGGGCGG GGGTGACCGC GGTAGAGGCG
AAGCCTTTGA CCGGACGCAC GCATCAGATC CGGGTGCACC TGGCCCACTC CGGTTTTCCC
ATCATCGGGG ACGAGACCTA CGGCGGCATA CCCGCAGCCC GAATGATGCT GCACTGCCGC
GGCATGCGCT TTACCGGGGC GAGGGGAAAG GTCATCGAGG CATTCGCCCC CATTGATGCA
GACTTCAGGG CGGCTGCAGC GGAAGGGATC TGGGAAGAGA GCGCGGAGCA GTAG
 
Protein sequence
MILTARVDAE LAGTRLDDAA KTLFPQYSKG EIRRIIDWGG CYLSQTLVRV ASRTVKEGEE 
IALGIMEAER CIELAYKKEE LLYEDKDFLA VYKAAGFNSQ RTPYQLKGTV EYAVECYMKS
IGLRDPSRVV HRLDRGTSGV MFFPKHKQAA TLISNLLKDG KVQKTYWALV AGSPDQQSWK
VDAPLGKVSK FKYGVALNGK PARTLFRVVG EGAGVTAVEA KPLTGRTHQI RVHLAHSGFP
IIGDETYGGI PAARMMLHCR GMRFTGARGK VIEAFAPIDA DFRAAAAEGI WEESAEQ