Gene Gbem_3462 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagGbem_3462 
Symbol 
ID6780324 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameGeobacter bemidjiensis Bem 
KingdomBacteria 
Replicon accessionNC_011146 
Strand
Start bp3975447 
End bp3976901 
Gene Length1455 bp 
Protein Length484 aa 
Translation table11 
GC content67% 
IMG OID642769456 
Productphosphomethylpyrimidine kinase 
Protein accessionYP_002140251 
Protein GI197119824 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG0351] Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase
[COG0352] Thiamine monophosphate synthase 
TIGRFAM ID[TIGR00097] phosphomethylpyrimidine kinase
[TIGR00693] thiamine-phosphate pyrophosphorylase 


Plasmid Coverage information

Num covering plasmid clones27 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGCTAAGAC TCGTGGTGGA TCATAGTGGC AAGGAGCGGC GCATAGGGGG GCTCTACCTC 
ATCACGGATC AAGCTGAGCG CCTGGTCCAC CGCGTGCGCG AGGCGCTCTC CTCGGGAGGG
GTCGCCGTCC TGCAGTACCG GGACAAGGTC CGCAGCTACG AGGAACGCCT GGAACTGGGA
CAGGAGCTGA AACACCTCTG CACGGAATTC CAGGTGGAAT TCATCGTCAA CGACGACGTC
GAACTGGCCT TCGCCCTCGA CGCCGACGGC GTCCATCTGG GGCAGGACGA CGGCGACCCG
GCCGCGGCAC GCGAGGCGCT CGGCCCCAAA AAGATGATCG GGATCTCGAC CCATTCGCTC
ACGGAAGCGC TCGAGGCGCA GGAGGCCGGC GCCGACTACG TCGGCTTCGG AGCCATCTAC
CCCACCGACA GCAAGGAGGT CGAGCATATC CAGGGGCCGG AGAAGCTCGT GCTTTTGAAG
GAAAAGCTGA GGATACCGGT GGTCGCCATC GGCGGCATCA CCAGGGACAA CGCCTGCGCG
GTGATCGACG CCGGAGCCGA CGCCATCGCG GTGATCTCGG CGGTGCTGTC GGCCAGATCC
CCCGCGCTCG CCGCGACGGA ACTGGCGCTC CTCTTCAACA GGAAGGCGAT GCAGCCGCGC
GGCGGCGTGC TCACCGTGGC CGGGAGCGAC TCGGGAGGGG GCGCCGGCAT CCAGGCGGAC
CTGAAGACTG TGACGCTTTT GGGAAGCTAC GGCGCCTCTG CCGTCACCGC GCTTACCGCA
CAGAACACCC GCGGCGTTAC CGCCATCCAT CCGGTCCCGG CCGCCTTCCT CGCGGAACAG
ATCGACGCGG TCCTTACGGA CATCCCGATC GACGTGGTGA AGGTAGGGAT GCTCTCCTCG
GCCGAGAACG CCGCCACCCT CGCCGACAGG CTCACCGACC ACGGCGTGAG GATGGTGGTG
CTCGACCCGG TGATGAGCGC CAAGGGGGGG GTAGCGCTCA TGGAGGACGA GGCGCTAGGC
GTCCTGAAAC AGAGGCTCAT CCCGCTTTGC TACCTGCTCA CGCCGAACAT CCCGGAGGCC
GAGGCCCTCA CCGGGCTCAC CATCACCGAT ACGGCCGGCA TGGAACTAGC TGCTCGGGCT
CTGCACCTCA TGGGGGCAAA GCACGTGCTG GTCAAGGGGG GGCACCTGAC CGAGGGGGTA
GTCACCGACA TCCTCTTCGA CGGCGCCGGC TTCACCCGCT TCACGGCTCC GCGCGTACTC
ACCCGCAACA CCCACGGCAC CGGCTGCACG CTGGCCTCGG CAATAGCAAG CTATCTAGCC
CAGGGGGAAC CGCTCCCCGG CGCGGTGCTC CGGGCGAAGC TCTTCGTCAC CCGCGCCATC
AAGTACGCCC AACCGCTGGG AAAGGGGCAC GGCCCCGTGA ACCATTTCAT GGCGGCAAGA
GACCAGGCCG AATAA
 
Protein sequence
MLRLVVDHSG KERRIGGLYL ITDQAERLVH RVREALSSGG VAVLQYRDKV RSYEERLELG 
QELKHLCTEF QVEFIVNDDV ELAFALDADG VHLGQDDGDP AAAREALGPK KMIGISTHSL
TEALEAQEAG ADYVGFGAIY PTDSKEVEHI QGPEKLVLLK EKLRIPVVAI GGITRDNACA
VIDAGADAIA VISAVLSARS PALAATELAL LFNRKAMQPR GGVLTVAGSD SGGGAGIQAD
LKTVTLLGSY GASAVTALTA QNTRGVTAIH PVPAAFLAEQ IDAVLTDIPI DVVKVGMLSS
AENAATLADR LTDHGVRMVV LDPVMSAKGG VALMEDEALG VLKQRLIPLC YLLTPNIPEA
EALTGLTITD TAGMELAARA LHLMGAKHVL VKGGHLTEGV VTDILFDGAG FTRFTAPRVL
TRNTHGTGCT LASAIASYLA QGEPLPGAVL RAKLFVTRAI KYAQPLGKGH GPVNHFMAAR
DQAE