Gene Gbem_3396 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagGbem_3396 
Symbol 
ID6780259 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameGeobacter bemidjiensis Bem 
KingdomBacteria 
Replicon accessionNC_011146 
Strand
Start bp3910991 
End bp3911950 
Gene Length960 bp 
Protein Length319 aa 
Translation table11 
GC content64% 
IMG OID642769392 
Productpseudouridine synthase, RluA family 
Protein accessionYP_002140187 
Protein GI197119760 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0564] Pseudouridylate synthases, 23S RNA-specific 
TIGRFAM ID[TIGR00005] pseudouridine synthase, RluA family 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.685542 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGAACCGA TCGAACTCAC CTTCCCCAGC GACTCCGATC CGGAGCGGCT GGACAGCTTC 
ATATCCCGCA GCGTACCGGA GCTGACCCGC TCGGCGGCCC TCAGGCTCAT AGAGACCGGG
TTCGCCACCG TCAACGGCTC AAAGCAAAAA CCCGCCTTGA AACTCAAGGG AGGCGAGGTG
GTCCAGGTGG TGGTCCCGCC TCCGACGCCA GCCGAGCCCC AGCCCGAGGA GATCCCAATC
GAGGTGCTCT ACGAGGATGC CGAACTGGTG GTGGTGAACA AGGGGGCGGG GATGGTGGTG
CATCCTGGCG CCGGCAACCC GGAGGGGACG CTGGTGAACG CCCTGCTGGC CCACTGCAAG
GACCTCTCCG GCATCGGGGG CGAACTGCGT CCCGGCATCG TGCACCGCAT CGACAAGGAC
ACCTCCGGCA CCCTGGTCGT CGCCAAGTGC GACCGGGCCC ACAACGCCCT CGCCGAACAG
TTCAAGGAAC ACAGCATAAA AAGGGTCTAC CTCGCCCTCG TCTACGGCTC GCCCAAAGAG
GACAAGGGAA GAATCGAGTC GACCATAGGC CGCCATCCCA CCGACCGGAA GAAGATGTCC
GCGAAGGCAC GCCACGGCAA GCAGGCGGTG ACCCACTGGC GGGTGGTAGC CCGCTACCCC
GGCATTACCC TGATACGCCT GAGGCTTGAG ACCGGCCGCA CCCACCAGAT CAGGGTGCAC
ATGTCCGAGG CTGGGCATCC GCTTTTGGCG GACGAGGTGT ACGGCGGCAC GGGAAGACTC
TCAGGTGTGC AGGACCCGGT CCTCAAACAG ATGATCAAGT CGATGGGACG GCAGGCTCTG
CACGCGAAGA CGCTCGGTTT CCTGCATCCG GTCTCCGGGA AGTACCTGGA GTTCGACACC
GAACTCCCCC CGGACATGGC CGGCATCGTC GCCTACTTGG AAGAGAAGAA CCGGGGATAA
 
Protein sequence
MEPIELTFPS DSDPERLDSF ISRSVPELTR SAALRLIETG FATVNGSKQK PALKLKGGEV 
VQVVVPPPTP AEPQPEEIPI EVLYEDAELV VVNKGAGMVV HPGAGNPEGT LVNALLAHCK
DLSGIGGELR PGIVHRIDKD TSGTLVVAKC DRAHNALAEQ FKEHSIKRVY LALVYGSPKE
DKGRIESTIG RHPTDRKKMS AKARHGKQAV THWRVVARYP GITLIRLRLE TGRTHQIRVH
MSEAGHPLLA DEVYGGTGRL SGVQDPVLKQ MIKSMGRQAL HAKTLGFLHP VSGKYLEFDT
ELPPDMAGIV AYLEEKNRG