Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Gbem_3396 |
Symbol | |
ID | 6780259 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Geobacter bemidjiensis Bem |
Kingdom | Bacteria |
Replicon accession | NC_011146 |
Strand | + |
Start bp | 3910991 |
End bp | 3911950 |
Gene Length | 960 bp |
Protein Length | 319 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 642769392 |
Product | pseudouridine synthase, RluA family |
Protein accession | YP_002140187 |
Protein GI | 197119760 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 0.685542 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGAACCGA TCGAACTCAC CTTCCCCAGC GACTCCGATC CGGAGCGGCT GGACAGCTTC ATATCCCGCA GCGTACCGGA GCTGACCCGC TCGGCGGCCC TCAGGCTCAT AGAGACCGGG TTCGCCACCG TCAACGGCTC AAAGCAAAAA CCCGCCTTGA AACTCAAGGG AGGCGAGGTG GTCCAGGTGG TGGTCCCGCC TCCGACGCCA GCCGAGCCCC AGCCCGAGGA GATCCCAATC GAGGTGCTCT ACGAGGATGC CGAACTGGTG GTGGTGAACA AGGGGGCGGG GATGGTGGTG CATCCTGGCG CCGGCAACCC GGAGGGGACG CTGGTGAACG CCCTGCTGGC CCACTGCAAG GACCTCTCCG GCATCGGGGG CGAACTGCGT CCCGGCATCG TGCACCGCAT CGACAAGGAC ACCTCCGGCA CCCTGGTCGT CGCCAAGTGC GACCGGGCCC ACAACGCCCT CGCCGAACAG TTCAAGGAAC ACAGCATAAA AAGGGTCTAC CTCGCCCTCG TCTACGGCTC GCCCAAAGAG GACAAGGGAA GAATCGAGTC GACCATAGGC CGCCATCCCA CCGACCGGAA GAAGATGTCC GCGAAGGCAC GCCACGGCAA GCAGGCGGTG ACCCACTGGC GGGTGGTAGC CCGCTACCCC GGCATTACCC TGATACGCCT GAGGCTTGAG ACCGGCCGCA CCCACCAGAT CAGGGTGCAC ATGTCCGAGG CTGGGCATCC GCTTTTGGCG GACGAGGTGT ACGGCGGCAC GGGAAGACTC TCAGGTGTGC AGGACCCGGT CCTCAAACAG ATGATCAAGT CGATGGGACG GCAGGCTCTG CACGCGAAGA CGCTCGGTTT CCTGCATCCG GTCTCCGGGA AGTACCTGGA GTTCGACACC GAACTCCCCC CGGACATGGC CGGCATCGTC GCCTACTTGG AAGAGAAGAA CCGGGGATAA
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Protein sequence | MEPIELTFPS DSDPERLDSF ISRSVPELTR SAALRLIETG FATVNGSKQK PALKLKGGEV VQVVVPPPTP AEPQPEEIPI EVLYEDAELV VVNKGAGMVV HPGAGNPEGT LVNALLAHCK DLSGIGGELR PGIVHRIDKD TSGTLVVAKC DRAHNALAEQ FKEHSIKRVY LALVYGSPKE DKGRIESTIG RHPTDRKKMS AKARHGKQAV THWRVVARYP GITLIRLRLE TGRTHQIRVH MSEAGHPLLA DEVYGGTGRL SGVQDPVLKQ MIKSMGRQAL HAKTLGFLHP VSGKYLEFDT ELPPDMAGIV AYLEEKNRG
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