| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Gbem_3089 |
|---|
| Symbol | |
|---|
| ID | 6779948 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Geobacter bemidjiensis Bem |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011146 |
|---|
| Strand | - |
|---|
| Start bp | 3573616 |
|---|
| End bp | 3574416 |
|---|
| Gene Length | 801 bp |
|---|
| Protein Length | 266 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 642769086 |
|---|
| Product | pseudouridine synthase |
|---|
| Protein accession | YP_002139887 |
|---|
| Protein GI | 197119460 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
|---|
| TIGRFAM ID | [TIGR00093] pseudouridine synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.000000212991 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCTGGAAC GTTTACAGAA GATACTCTCG CAGGCAGGGG TTGCTTCCCG ACGCGAGTCG
GAAGGGATAA TCGCCGCGGG GAGGGTGGCC GTTAACGGCA CGGTGGTAAC GGAGTTGGGG
ACGAAGGCGG ATCCCGACAC CGACACCATA ACCCTGGACG GCAAGCCGAT CACCATCGAA
GAGAAGCGGG TCTACATCCT GCTCTATAAA CCGGTCGGCT ACATGACCAC CATGAAGGAC
CCGGAAGGGC GCCCGATCGT GAGCGATCTT CTCAATGGGG TGAAGGAGCG GGTGTACCCC
ATCGGCCGCC TGGACTACAA CACAGAGGGG CTGCTCCTTT TGACCAACGA CGGGGCGCTC
GCCAACTCGC TGATGCACCC AAGCCACGAG GTGGACAAGG GGTACCTGGT AAGGGTGAGC
GGGCAGGTAT CTCCTCTCCA GATCAAGAAG CTCTCCGAGG GGGTGAAACT GGAGGACGGC
ATGACCGCTC CCGCCAAGGT GCTCCCGGTG AGCGAGAGCG AGAACAACTC CTGGATCTCG
ATTACCATCC ATGAGGGGCG CTACCGTCAG GTGCGGCGCA TGTGCGAGGC TGTGGGGCTG
AACGTGGTGC GCCTGAAGCG GGCCCGGTAC GACTTTCTTG AGATAGGCGA CATGAAGCCC
GGGGAGTACA GGCACCTGGC GCCTGAAGAA GTGACCCGGC TCAACAGGAA GATGGCCCCG
GTAGGCACAG GGCGCGGTCC ACGCAAGACC GGAGTGGTAG CGCGGCGAGG TTCGACAGGC
ACAGGAAGGC GGACACGCTG A
|
|---|
| Protein sequence | MLERLQKILS QAGVASRRES EGIIAAGRVA VNGTVVTELG TKADPDTDTI TLDGKPITIE
EKRVYILLYK PVGYMTTMKD PEGRPIVSDL LNGVKERVYP IGRLDYNTEG LLLLTNDGAL
ANSLMHPSHE VDKGYLVRVS GQVSPLQIKK LSEGVKLEDG MTAPAKVLPV SESENNSWIS
ITIHEGRYRQ VRRMCEAVGL NVVRLKRARY DFLEIGDMKP GEYRHLAPEE VTRLNRKMAP
VGTGRGPRKT GVVARRGSTG TGRRTR
|
|---|
| |