| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Gbem_3024 |
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| Symbol | |
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| ID | 6779880 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Geobacter bemidjiensis Bem |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011146 |
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| Strand | - |
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| Start bp | 3491761 |
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| End bp | 3492870 |
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| Gene Length | 1110 bp |
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| Protein Length | 369 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 642769018 |
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| Product | riboflavin biosynthesis protein RibD |
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| Protein accession | YP_002139822 |
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| Protein GI | 197119395 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG0117] Pyrimidine deaminase
[COG1985] Pyrimidine reductase, riboflavin biosynthesis |
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| TIGRFAM ID | [TIGR00227] riboflavin-specific deaminase C-terminal domain
[TIGR00326] riboflavin biosynthesis protein RibD |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.231674 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGGCCGATC TACACCTTAA AATGATGCGC CTGGCGCTTG CCGAGGCCAG AAAGGGAATC
GGCAAGACGG CCCCCAACCC CGCCGTCGGC TGCGTCATCG TCCGTAACGG CGAAGTGGTC
GGGACCGGCT GGCACAAAAA GGCGGGGACT CCGCACGCCG AGGTGCATGC CTTGAAGGCG
GCCGGCGATA AGGCGGCCGG CGCCGACGCC TACGTTACCC TTGAACCCTG CTCCCACTTC
GGCAAGACCC CCCCCTGCGC CAAAGCCCTC ATCGAGGCCC GTGTGGCGCG CGTTTTCGTC
GCCATGGTCG ACCCCAACCC GCTTGTTTCC GGGCGGGGGA TCCAGATGCT CAAGGACGCG
GGGATAGCAG TCGAAGTAGG CCTTTTGAAA GAGGAGAGCC GCGAGCTGAA CCTCCCCTTC
ATCAAGTGGA TCCAGACCAA GCTACCTTAC GTGGTGCTTA AGAGCGCCCT CACCCTGGAC
GGCAAGAGCG CCACGGCAAG CGGCGACTCC AAATGGGTGA CCAGCGACCG TGCCCGGCGC
GAAGTGCACC GGTTGCGCGG GCGCCTCGAC GCCATCATGG TCGGTGTAGG CACCGTGGTG
AAGGACGACC CGCTTCTAAC CTGCAGGGTT CCCGGCGGCA AAGACCCGCT GCGGGTGATC
GTCGACTCGA CCCTCAGGAT ACCGCTGCAC GCCGCGATCC TCGGCGTCAA GTCGAAAGCC
GAAACCGTCA TAGCCACCTG CAGCTGCGAC CATGCAAAGA TGGAAGCACT CAAGGCCCAC
GGGGTCGAGA TTCTCACCTG CTGCGAGAGC GATGGGCGAG TCGATCTTGC CGACCTCTTC
GAAAAGTTGG GTGCGCGCGG CGTGCAGTCC GTGCTGCTCG AAGGTGGGAG TCACTTGGCC
GGGGCCGCTC TTCGTGCCGG GCTCATCGAC AAGTGCATGA TCTTTCTGGC GCCGAAGCTC
GTGGGAGGAG CCGGCATGGG GCTCTTCGCA GGGGAGGGGG CGACGCTCAT GGCGGACGCC
ATACGGCTGG AGCAGGTGAG GGTGAAGCGA GTGGGAGTCG ACCTCCTGGT GGAAGGCGTC
CCCGTAAAAA CAAAAAGTCA GAACCCCTAA
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| Protein sequence | MADLHLKMMR LALAEARKGI GKTAPNPAVG CVIVRNGEVV GTGWHKKAGT PHAEVHALKA
AGDKAAGADA YVTLEPCSHF GKTPPCAKAL IEARVARVFV AMVDPNPLVS GRGIQMLKDA
GIAVEVGLLK EESRELNLPF IKWIQTKLPY VVLKSALTLD GKSATASGDS KWVTSDRARR
EVHRLRGRLD AIMVGVGTVV KDDPLLTCRV PGGKDPLRVI VDSTLRIPLH AAILGVKSKA
ETVIATCSCD HAKMEALKAH GVEILTCCES DGRVDLADLF EKLGARGVQS VLLEGGSHLA
GAALRAGLID KCMIFLAPKL VGGAGMGLFA GEGATLMADA IRLEQVRVKR VGVDLLVEGV
PVKTKSQNP
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