| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Gbem_2916 |
|---|
| Symbol | |
|---|
| ID | 6779769 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Geobacter bemidjiensis Bem |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011146 |
|---|
| Strand | - |
|---|
| Start bp | 3363290 |
|---|
| End bp | 3365197 |
|---|
| Gene Length | 1908 bp |
|---|
| Protein Length | 635 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 642768910 |
|---|
| Product | arginine decarboxylase |
|---|
| Protein accession | YP_002139715 |
|---|
| Protein GI | 197119288 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1166] Arginine decarboxylase (spermidine biosynthesis) |
|---|
| TIGRFAM ID | [TIGR01273] arginine decarboxylase, biosynthetic |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCCAAAT GGACTATCAA CGATTCCTCG AAGATCTACA ACATCGACAA CTGGGGCGCG
GAGCTCTTCT CCATCAACAA GAAGGGGAAC GTCTGCGTGC ATCCGTCCCC CAACTCCAAG
TACTCCATCG ATCTCAAGGT GCTGGTTGAC GACTTGATCA AGAGGAAGAT CAAGCCTCCG
ATCCTCCTGC GCTTCATGAA CATCCTGGAG GGGCGCATCG CCTCCATCAG CCGGGTGTTC
AAAAACGCGA TCAGCGACAA CAACTACCCG GCCAAGTACC AGACCTTCTA CCCCATCAAG
GTGAACCAGC AGCGCCAGGT GGTGGAGGCG ATCGCGAACT TCGGCAAGAA GTACAACATC
GGCCTCGAGG TCGGCTCCAA GCCTGAGCTG GTGGCGGCGA TCTCCATGTC GACCGGGAAC
AACCTCCCCA TCCTCTGCAA CGGCTACAAG GACACCGAAT TCATCGAGAC GGTGCTCTTC
GCGACCCGCG TCGGCTACGA CATCACCATC GTCGTGGAGA AACTCTTCGA GCTGGAGAAG
ATCGTCGAGG TTTCCAAGCG CACCGGAATC GTGCCGAAAC TCGGCATCCG GGTGAAGCTC
TCCTCCAAAG GGATCGGCAA GTGGTCCACC TCCGGCGGCG ACGACGCCAA GTTCGGCCTG
CGCATCTCCG AACTGATCGC CGCCATCGAC ATGCTCAAGC AAAACGACAT GCTCGACAGC
GTGAAGCTCC TGCATTTCCA CGTCGGGAGC CAGATCACCA AGATCGACAA GATCAAGAAC
GCGCTCATCG AGGGGACCAG GATCTACGCG GAGATGAGGA AGCTAGGTGT CAACCTGGAA
TTCCTCGATA TCGGCGGCGG GCTTGGGGTC GACTACGACG GTTCCAAGTC GAGCTACTTC
TCCAGCGTCA ACTACTCGCT CGAAGAGTAC GCCAACGACG TCATCTACCA GGTGAAGAAC
ATCTGCGACG ACGCAGGTGT CCCTTGCCCG AACATCATCT CCGAGTCCGG GCGCGCCACC
GTCGCCCACT ACTCGGTATT GGTCACCGAC GTCTTGAACA ACAACACCCA GACGCTGATG
CCGGACTTCG AGTCGATCCT GACCGAGCCG GAGAAGCTCT CGCCGACCGT TAAAAAGCTG
GTCGACATCT ACAAGAGCAT CGACAAGCAT TCCTTGCGCG AGGACTACCA CGACACCATC
CAGCTGATCC AGGAGTCGGT GAGCCTGTTC AACCTGGGCT ACCTGAACAT GGCAGAGCGC
GCCAACGCTG AATGGATCTG CTCCAAGATC ATCAGGAAGA TCAACTCGAT CGTGGAAAAG
ATGAAGCCGA TCCCGGACGA GCTGCAGAAT TTCCAGCTGA GCCTGAGGCA GACCTATTTC
GCCAACTTCT CGCTCTTTCA GTCCATCCCG GACTCCTGGG CCATCGACCA GCTCTTCCCG
ATCGTCCCGA TCCAGCGGCT GGACGAGAAG CCGGACGTGC TGACCTCCAT CGCCGACATC
ACCTGCGATT CAGACGGCGA GATCACCAGC TTCGTCGGCG AGAACGGCAG GACCAAGGCG
CTGCCGCTGC ACAAGATCAA GGTGGACGAG CAGTACTACA TCGGGTTCTT CCTGATCGGT
GCCTACCAGG AGATCCTGGG GGACATGCAC AACCTCTTCG GCGACACCAA CGCGGTGCAT
ATCACCTTCA ACAAGAAGAC CAATTATAAG ATCGACACGG TCATATCCGG CGACGCCACC
TGGGAAAGCC TCAAGTACGT GCAGTACGAC AGCCAGGAGA TTCTCAAGAG GGTGCGCAAC
AATCTGGAGA AGGACGTCTC GCTGCAGAAG GTCTCCATCG AGGAGAGCAG CCACTTCCTC
GAGCTGTTGG ATAAGACGCT GCAGTCATAC ACATATCTGG GGGAGTAG
|
|---|
| Protein sequence | MAKWTINDSS KIYNIDNWGA ELFSINKKGN VCVHPSPNSK YSIDLKVLVD DLIKRKIKPP
ILLRFMNILE GRIASISRVF KNAISDNNYP AKYQTFYPIK VNQQRQVVEA IANFGKKYNI
GLEVGSKPEL VAAISMSTGN NLPILCNGYK DTEFIETVLF ATRVGYDITI VVEKLFELEK
IVEVSKRTGI VPKLGIRVKL SSKGIGKWST SGGDDAKFGL RISELIAAID MLKQNDMLDS
VKLLHFHVGS QITKIDKIKN ALIEGTRIYA EMRKLGVNLE FLDIGGGLGV DYDGSKSSYF
SSVNYSLEEY ANDVIYQVKN ICDDAGVPCP NIISESGRAT VAHYSVLVTD VLNNNTQTLM
PDFESILTEP EKLSPTVKKL VDIYKSIDKH SLREDYHDTI QLIQESVSLF NLGYLNMAER
ANAEWICSKI IRKINSIVEK MKPIPDELQN FQLSLRQTYF ANFSLFQSIP DSWAIDQLFP
IVPIQRLDEK PDVLTSIADI TCDSDGEITS FVGENGRTKA LPLHKIKVDE QYYIGFFLIG
AYQEILGDMH NLFGDTNAVH ITFNKKTNYK IDTVISGDAT WESLKYVQYD SQEILKRVRN
NLEKDVSLQK VSIEESSHFL ELLDKTLQSY TYLGE
|
|---|
| |