| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Gbem_2750 |
|---|
| Symbol | |
|---|
| ID | 6782748 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Geobacter bemidjiensis Bem |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011146 |
|---|
| Strand | - |
|---|
| Start bp | 3180216 |
|---|
| End bp | 3181373 |
|---|
| Gene Length | 1158 bp |
|---|
| Protein Length | 385 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 642768743 |
|---|
| Product | 1-deoxy-D-xylulose 5-phosphate reductoisomerase |
|---|
| Protein accession | YP_002139550 |
|---|
| Protein GI | 197119123 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG0743] 1-deoxy-D-xylulose 5-phosphate reductoisomerase |
|---|
| TIGRFAM ID | [TIGR00243] 1-deoxy-D-xylulose 5-phosphate reductoisomerase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAACC TCACCATCCT AGGTTCCACA GGTTCCATCG GGGTCAGCAC CCTCGACGTG
GTCAAAGCGT ATCCCGACAT GTTCCGGGTG GTCGCGCTTA CCGCAGGGAA CAACCTCGAA
CTCTTAAAGA CCCAGATAGA GACCTTCAGC CCCGACCTGG TCTCGGTGCT GACCGCCGAG
AAGGCCCAGG CCCTCAGCCG GTCGCTCACC GGCAAAAAGC CCGAGATAAT GCATGGCGTG
GAGGGGATGA TAGCCGCCGC GACCGCATCC GAAACCACCA TGGTGGTGGC GGCCATCGTC
GGTGCCGCAG GGCTTGTTCC CACCACGGCC GCGATCATGG CGGGAAAGGA CGTGGCGCTC
GCCAATAAGG AGACACTGGT AACCGCAGGC CATCTGGTGA TGCAGATGGT GCGCGAGAAG
AAGGTGAATC TTTATCCGGT CGACAGCGAG CATTGCGCGG TGTTCCAGTC CATGGCGGGG
CACCGCAGCC AGGACATTGC CCGGGTGATC CTCACTGCTT CCGGCGGCCC CTTCCTCAAC
TGGGGAAGAG AGAAGTTGCA AGCCGCGACG GTTGCCGACG CGCTCAACCA TCCCAACTGG
AGCATGGGGA GAAAGATCAC CGTTGACTCG GCCACCATGA TGAACAAGGG GCTTGAGGTG
ATCGAGGCCC GCTGGCTTTT CGATATCCCG GTGCAGAGAA TAGGGGTGAA CATCCATCCG
CAAAGCATCA TCCACTCCAT GGTGGAATAT GTGGACGGGA GCGTGATGGC GCAACTGGGG
ACTCCCGACA TGAAGGGGCC CATCGCCTAC GCGCTCACCT ACCCGGGCCG CGTACCCTCC
GGGGTCAAGG CGCTTGATCT CACCGCGCTT TCGGGGCTCA CCTTCTTCAA GCCGGACACG
GACCGCTTCC CCGCTTTGCA GCTCGCCTAT CGCGCGGCTG ACGCCGGGGA AAGCATGCCG
GCGGTCATGA ACGCCGCCAA CGAGATCGCC GTCGAGGCGT TCCTCGGTGG AAGGATCGGC
TTCATGGCCA TAGCCGAGGC GATCGAGAAG GTGATGGACC TGCACGAGCC GCACGCGCTG
GCATCGATCG AAGAGGTGCT GGAGGCGGAC CGTTGGGGTA GGAGAACCGC CAAGGAAGTC
CTTGGCGTAG GCTGCTGA
|
|---|
| Protein sequence | MKNLTILGST GSIGVSTLDV VKAYPDMFRV VALTAGNNLE LLKTQIETFS PDLVSVLTAE
KAQALSRSLT GKKPEIMHGV EGMIAAATAS ETTMVVAAIV GAAGLVPTTA AIMAGKDVAL
ANKETLVTAG HLVMQMVREK KVNLYPVDSE HCAVFQSMAG HRSQDIARVI LTASGGPFLN
WGREKLQAAT VADALNHPNW SMGRKITVDS ATMMNKGLEV IEARWLFDIP VQRIGVNIHP
QSIIHSMVEY VDGSVMAQLG TPDMKGPIAY ALTYPGRVPS GVKALDLTAL SGLTFFKPDT
DRFPALQLAY RAADAGESMP AVMNAANEIA VEAFLGGRIG FMAIAEAIEK VMDLHEPHAL
ASIEEVLEAD RWGRRTAKEV LGVGC
|
|---|
| |