| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Gbem_2024 |
|---|
| Symbol | |
|---|
| ID | 6782018 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Geobacter bemidjiensis Bem |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011146 |
|---|
| Strand | - |
|---|
| Start bp | 2330264 |
|---|
| End bp | 2331817 |
|---|
| Gene Length | 1554 bp |
|---|
| Protein Length | 517 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 642768019 |
|---|
| Product | multi-sensor signal transduction histidine kinase |
|---|
| Protein accession | YP_002138833 |
|---|
| Protein GI | 197118406 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG4251] Bacteriophytochrome (light-regulated signal transduction histidine kinase) |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGGCGGAT TAGCCATCGA GGACCCGGGC TTCACCCTTT TGTACGTGGA GGACGAGCAG
GTCACCAGGG AGACGGTGCT TTCCCTTTTG CAGCGGCGCT TTCCCAAGCT CGCCCTTTTA
AGCGCGGCAA ACGGCGCCGA AGGCATGGCG CTTTTCCGGG AGCACGCACC CGACCTCGTG
GTGACCGACA TCAAGATGCC GGCCATGAGT GGCATCGACA TGGCGCGGGA AATGATGGAG
CAAAAACCTT CCCTCCCGGT GATCGTCACC AGCGCTCATT CCGACATGGA GTACCTGATC
GAGTCGATCG AGCTGGGGAT CAGCCGCTAC GTCCTGAAGC CGATAGACAG CTCGAAGCTC
TTCGCGGCGG TGGAAAGCGC GCTTACAACC CTCACCCAGG AAAGGGAGCT ATTGGCCCAC
CAGGTGTTCG TGCGCAGGCT CTCGCGGGCG GTGGAGCAGA GCGCCAGCAG CATCGTCATC
GCCAACCCTG AAGGGGTGAT CGACTACGTG AACCCCAGGT TCACCACGCT GACCGGCTAC
GAGCCCGGCG AGGTGCTGGG AAAAAACCTG AAGTCGCTGA AAGGAAAAGC CGAACTATGG
GACCGGGTCG CAGCCGGAGA GGAGTGGCAC GGCGAGTTCG AGGGGGTGAA GAAGAACGGC
GAGGTTTTCT ACGAGTCCAC CTCCCTCTCC CCCGTCTACG ACGAGACCGG CGCTCTCAGC
GACCTGGTCG CGGTGCAGGA GGAGATCACC GAAAGGGTGC TGTCCGAGCG ACGGATCGAG
GCGTTGAACC GGAACCTCGC GGCGCGAGCC GAGGAACTGG AACTCGCGAA CCGCGACCTG
GAGGGGTTCA GCTACACGGT CTCGCACGAT CTGCGCACGC CGCTGACCAA CATCAACGGC
TACTGCCAGG TGATACTGGA GCTTTACGGC GCGACGCTGG ACGAGCAGTG CAAGGATTTC
ATCAAGATCA TCTTCGACGA AACCGTCAAC ATGAACCAGT TGATCAAGAC GCTGCTTGAA
TTCTCCCGGG TGAGCCGCAG CGAGATGACC CGGTCCGAGG TTGATTTGAG CCAGCTTACC
TCCCTGGTCT GCGCCTCCCA GCAATTGAGC GAACCGCAGC GGCGGGTGAC CTTCAGCATA
GCCCCCGGGA TGACGGCCCT TGGGGACCCC GACCTTTTGA AGGTGGTGCT GCAAAACCTG
ATCTCCAACG CCTGCAAATA CTCGGCGAAC CGGGAAGACG CCGCGGTCGA AGTAGCCTCC
CTGGACGAGA GCGGGGAGCT CGTTTACTTC GTGCGCGACA ACGGCGCCGG CTTCGACATG
ACGCTGGCCG ACAAACTGTT CAGCCCCTTC CAGCGGCTCC ACTCGGAGCG GGAGTTCAAG
GGGTTCGGCA TAGGACTCGC CACCGTGCAG CGCATCATCC AGCGCCACGG CGGCAGGATC
TGGGCCGAGG GAGAGGTAGG GCTCGGGGCC TGCTTCTACT TCACCCTCCC CGATGAAAAC
ACGAGGCACG GAGCAGACCA CTGTTCGGCA AGGCAGGAGG AGCGCAAAAA GTGA
|
|---|
| Protein sequence | MGGLAIEDPG FTLLYVEDEQ VTRETVLSLL QRRFPKLALL SAANGAEGMA LFREHAPDLV
VTDIKMPAMS GIDMAREMME QKPSLPVIVT SAHSDMEYLI ESIELGISRY VLKPIDSSKL
FAAVESALTT LTQERELLAH QVFVRRLSRA VEQSASSIVI ANPEGVIDYV NPRFTTLTGY
EPGEVLGKNL KSLKGKAELW DRVAAGEEWH GEFEGVKKNG EVFYESTSLS PVYDETGALS
DLVAVQEEIT ERVLSERRIE ALNRNLAARA EELELANRDL EGFSYTVSHD LRTPLTNING
YCQVILELYG ATLDEQCKDF IKIIFDETVN MNQLIKTLLE FSRVSRSEMT RSEVDLSQLT
SLVCASQQLS EPQRRVTFSI APGMTALGDP DLLKVVLQNL ISNACKYSAN REDAAVEVAS
LDESGELVYF VRDNGAGFDM TLADKLFSPF QRLHSEREFK GFGIGLATVQ RIIQRHGGRI
WAEGEVGLGA CFYFTLPDEN TRHGADHCSA RQEERKK
|
|---|
| |