Gene Gbem_2020 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagGbem_2020 
Symbol 
ID6782014 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameGeobacter bemidjiensis Bem 
KingdomBacteria 
Replicon accessionNC_011146 
Strand
Start bp2324679 
End bp2326325 
Gene Length1647 bp 
Protein Length548 aa 
Translation table11 
GC content61% 
IMG OID642768015 
Productlong-chain-fatty-acid--CoA ligase 
Protein accessionYP_002138829 
Protein GI197118402 
COG category[I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism 
COG ID[COG0318] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00014741 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGCGATT TGCTGATCCC CCGTACCGCG TCCGCCTACA ATTACCCTTT GCTGATAAAG 
AACCTGTTGC TCTACCCGGT GGTCGACAAC CCCGACCAGG AGATCGTATA CCGTGACCTG
TACCGGGGCA ATTACCGCCA ACTGAGGGAG CGGGTGAAGC GGCTGGCCAA CATGCTCACC
GGGCTCGGCG TGAAGCCGGG GCAAACGGTG GCCGTGATGG ACTGGGACAG CCATCGCTAC
CTGGAACTTT TCTTCGCGGT GCCGATGATC GGCGCGGTGC TCCACACCAT AAACGTGCGC
CTGTCCGCGG AGCAGATCCT TTACACCATC GACCATGCCG AGGACGACGT GCTGCTGGTC
AACAGCGAGT TTCTCCCCAT CATGGAGCAG ATCCGCGGCA GGATCGACAA CGTCCGCACC
TATATCCTCA TCTCCGATGA CGGCATGACG GAATGCAGCA CCATCCCCGC CTGCGGCGAG
TACGAACAGC TCCTGGCCCA GGCTTCGCCG GAGTTCGAGT TCCCCGACCT GGACGAGAAC
ACCAGGGCCA CGACTTTCTA CACCACCGGA ACCACGGGGA TGCCGAAGGG GGTCTATTTC
AGCCACCGGC AACTGGTGCT TCATTCGCTG GGACTTTTGG CGACGCTCGG TTCCTCCACC
TCGCACGCCT GTCTGCACCG CGACGACGTC TACATGCCGA TTACCCCGAT GTTCCACGTT
CATGCCTGGG GGGTCCCCTA TATCGCCACC ATGCTGGGGG TGAAGCAGGT CTATCCCGGG
CGCTACCTGC CGGAAACCCT GCTGGAGCTC AAGGAGAAGG AAGGGGTCAG TTTCTCCCAT
TGCGTTCCGA CCATCCTGCA CATGCTCTTG AAGCACCCCC TTGCGGAAAA GATCGACCTG
CGGGGGTGGA AACTCATCAT CGGCGGCGCG GCTTTGTCGC GCAACCTCTG CGTCGAGTCG
CTGAGGCTTG GCATCGACGT CTTCACCGGG TACGGGATGT CCGAGACCTG CCCGATCCTC
ACCATTTCCA AGCTCACACC GGAGATGCTG GAACTATCCC ACGCCGAGCA GGCGGAAATC
CGCTGCAAAA CGGGTCTTGC CCTGGCCTTA GTCGATCTGC GCGTGGTCGA CAGCAACTTC
AACGAGCTCC CCCGCGACGG CGTCAGCGCC GGCAACGTGG TGGTGCGCTC CCCCTGGCTT
TCGCAGGGAT ACCTGAAGGA TCACAAGGCC TCCGAGCGTC TCTGGGAGGG GGGGTATCTC
CATACCGGCG ACGTGGCGGT GCGGGACGAG CTGGGCTATC TCAAGATCAC CGACCGGAGC
AAGGACGTGA TCAAGGTCGC CGGCGAATGG GTTTCCTCGC TGGAGCTGGA GGACATTGTC
GCGCATCACC CGGCAGTAGC CGAGGTGGCG GTGATAGGGA AGCCTGACGA GAAGTGGGGC
GAGCGCCCCC TGGCGCTGGT CGTTCTCAAG CCGACCGAGG GGACGAAGGT GACCGATAAG
GAGATCGCCC ACCACGTGAG GGAGTACGCC GACAAGGGTG TGGTGAGCAA GCAGGTCGTC
CTGGTCAAGG TGAAGCTCGT TCCATCCATC GACAAGACTA GCGTTGGAAA GATCAACAAG
GTGGCACTGC GGGAGAAATA TCTCTGA
 
Protein sequence
MSDLLIPRTA SAYNYPLLIK NLLLYPVVDN PDQEIVYRDL YRGNYRQLRE RVKRLANMLT 
GLGVKPGQTV AVMDWDSHRY LELFFAVPMI GAVLHTINVR LSAEQILYTI DHAEDDVLLV
NSEFLPIMEQ IRGRIDNVRT YILISDDGMT ECSTIPACGE YEQLLAQASP EFEFPDLDEN
TRATTFYTTG TTGMPKGVYF SHRQLVLHSL GLLATLGSST SHACLHRDDV YMPITPMFHV
HAWGVPYIAT MLGVKQVYPG RYLPETLLEL KEKEGVSFSH CVPTILHMLL KHPLAEKIDL
RGWKLIIGGA ALSRNLCVES LRLGIDVFTG YGMSETCPIL TISKLTPEML ELSHAEQAEI
RCKTGLALAL VDLRVVDSNF NELPRDGVSA GNVVVRSPWL SQGYLKDHKA SERLWEGGYL
HTGDVAVRDE LGYLKITDRS KDVIKVAGEW VSSLELEDIV AHHPAVAEVA VIGKPDEKWG
ERPLALVVLK PTEGTKVTDK EIAHHVREYA DKGVVSKQVV LVKVKLVPSI DKTSVGKINK
VALREKYL