| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Gbem_1900 |
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| Symbol | |
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| ID | 6781890 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Geobacter bemidjiensis Bem |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011146 |
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| Strand | + |
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| Start bp | 2200142 |
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| End bp | 2203390 |
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| Gene Length | 3249 bp |
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| Protein Length | 1082 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 642767892 |
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| Product | carbamoyl-phosphate synthase, large subunit |
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| Protein accession | YP_002138710 |
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| Protein GI | 197118283 |
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| COG category | [E] Amino acid transport and metabolism
[F] Nucleotide transport and metabolism |
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| COG ID | [COG0458] Carbamoylphosphate synthase large subunit (split gene in MJ) |
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| TIGRFAM ID | [TIGR01369] carbamoyl-phosphate synthase, large subunit
[TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.00662116 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCTAAAC GCACAGACAT CAAGAAGATC CTCATTATCG GCGCAGGCCC GATCGTCATC
GGCCAGGCGT GCGAGTTCGA CTACTCCGGT ACCCAGGCCT GCAAGGCGCT CAAGGAAGAA
GGGTTCGAGG TGGTGCTCCT GAACTCCAAC CCGGCTACCA TCATGACGGA TCCGGACTTC
GCCGACTTCA CCTATATCGA ACCGGTCACC CCGGAGATCC TCGCGGCGAT CATCGAGAAG
GAGCGCCCCG ACGCGCTGCT CCCGACCCTG GGGGGGCAGA CGGCGCTGAA CACGGCCGTG
GCGGTAGCGG AAAACGGCAC CCTGGAGAAG TTCGGGGTTG AGCTGATCGG CGCGAAACTG
CCGGCCATCA AGAAGGCTGA GGACCGCACC CTGTTCAAGG AGGCCATGGT GAGAATCGGC
CTCGACGTGC CGAGATCGGG TCTCGCCCAC AACTACCAGG AGGCGATGGA GGTCATCAAG
TTCGTCGGCT TCCCGGCCAT CATCCGTCCT TCCTTCACCC TGGGGGGCAC CGGCGGCGGC
ATCGCCTACA ACATGGAAGA GTACGAGCGT ATGTCCATGG CCGGCATCGA GGCGTCGCCT
ACCGACGAGA TCCTGGTTGA GGAGTCGCTG ATCGGCTGGA AGGAGTACGA ACTGGAGGTG
ATGAGGGATA CCGCCGACAA CGTGGTCATC ATCTGCTCCA TCGAGAACTT CGACGCTATG
GGCGTGCACA CCGGCGACTC CATCACGGTG GCGCCTGCAC AGACCCTCAC CGACAAGGAA
TACCAGATCC TGCGCGACGC CTCGCTGAAG ATCATCCGCG AGATCGGCGT CGACACCGGC
GGCTCCAACA TCCAGTTCGG CACCAATCCG AAAAACGGCC GACTGATCGT CATCGAGATG
AACCCGCGCG TCTCCCGCTC CTCGGCGCTC GCCTCGAAAG CGACCGGCTT CCCGATCGCG
AAGATCGCCG CCAAACTCGC CGTCGGCTAC ACCCTGGACG AGATCACCAA CGACATCACC
AAGGAGACGC CGGCCTGCTT CGAGCCGACC ATCGACTACG TGGTCACCAA GATCCCGCGC
TTCACCTTCG AGAAATTCCC CGCTGCCGAC GCCACCCTCA CCACCCAGAT GAAGTCGGTG
GGCGAGGTCA TGTCCATCGG CCGCACCTTC AAGGAGTCCT TCCAGAAGGC GCTCCGCTCG
CTGGAGATCG GCTCCTGCGG CTTCGAGTCG AAGTTCTTCG GGGTAGGCGG CGACACCCGC
CGCGCGCTCA CCGAAAAAGA GCGCAACCTC CTGAACGACA AGTTGAGGAC CCCTAACTGC
GACCGCCTCT GGTACGTAGG CGACGCCTTC CGCTGCGGCA TGAGCGTGGA GGAGATCTAT
GCCCTTACCG CCATCGACCC CTGGTTCCTG AACAACATCC GCCAGATCAT CGAGATGGAG
GAGGAGCTCA AGCAGATCAA CATCAAGAAT GAATCCGGCG AAAAGCTGCA CGACATCCTC
TGGGACGCGA AACGCTACGG GTTCTCCGAC AAGTTCCTCT CCCAGCTCTG GAAGATAACC
GAAGCCGAGG TGCGCCAACT GCGCCTGTCG GTCGGGGTCA AGCCGGTCTT TAAAAGGGTC
GACACCTGCG CAGCCGAGTT CGTGGCACAC ACCCCATACC TCTACTCCAC CTACGAGGAG
GAGTGCGAGG CCGAGCCCAC CGACAAGAAG AAGATCATCA TCCTCGGCGG CGGACCCAAC
CGAATCGGCC AGGGTATCGA GTTCGACTAC TGCTGCGTGC ACGGCGTATT CGCCCTCTCC
GAGGACGGCT ACGAGACCAT CATGGTCAAC TGCAACCCGG AGACCGTTTC CACCGACTAC
GACACCTCGG ACCGCCTCTA CTTCGAGCCG CTCACCTTCG AGGATGTGCT GAACATCGTG
GACGTCGAGA AGCCGACCGG CGTTATCGTG CAGTTCGGCG GCCAGACTCC GTTGAAACTC
GCCGTGGCTC TTGAGAAGGC GGGGGTTCCC ATCATCGGCA CCTCGCCCGA CGCCATCGAC
CGCGCCGAAG ACCGCGAGCG CTTCCAGGAG ATGCTGCAAA AGCTCAAGCT CAGGCAGCCC
GAAAACGGCA CCGCCCGCTC CTTCGAGGAG TCCGAGGTGG TCGCCGAGCG TATCGGCTAC
CCTGTCGTGG TGCGCCCCTC CTACGTTCTC GGCGGACGCG CCATGGAGAT CGTGTACGAC
GTGGACAACC TGCGCCGCTA CATGCACACC GCGGTACAGG CTTCGCCCGA GCACCCGATC
CTGATCGACA AGTTCCTGGA CGAGGCGATC GAGATCGACG TCGACGCCCT TTGCGACGGC
CAAGTCGCCG TCATCGGCGG CATCATGGAG CACATCGAGG AGGCGGGTAT CCACTCCGGC
GACTCGGCCT GCTCGCTGCC GCCTTACTCC ATCTCCAAGG AGATCGTCGA GGAGATCAGG
CGCCAGACCA AGATGATGGC GCTGGAGCTG AACGTAAAGG GGCTCATGAA CGTGCAGTTC
GCCGTCAAGG GGAACGACAT CTACATCATC GAGGTCAACC CCCGCGCCTC GCGCACCTCG
CCCTTCGTCT CCAAGGCGAC CGGCAGGCCT TTGGCGAAGA TCGCCGCGCG CGTCATGGCG
GGCAAGACCC TGGCCGAGCT GGGGGTTACC GACGAGATCG TGCCGGTCCA TATCTCGGTC
AAGGAATCCG TCTTCCCCTT CGCCAAGTTC CCCGGCGTCG ATACCATCCT GGGACCGGAG
ATGAAGTCGA CCGGCGAGGT CATGGGGATC GGCGACACCT TCGCCAAGGC GTACGCCAAG
GCGCAGATGG GGGCCAACGT GAAGCTCCCG ACTTCCGGTA AAGTGTTCAT TTCAGTGAAG
GACACGGACA AAAAACATAT TGTCAGCGCT GCAAAAAGAC TGTATGATCA GGGCTTCGAA
TTGGTTGCTA CGCGCGGCAC GGCGAGTTAT CTGCAGGAAA AAGGGATCCC CGTTCAGGTA
GTAAACAAGG TAATCGAAGG ACGCCCCCAC ATAGTCGATG CGATCAAGAA CAACGAGATC
TGCATGGTCA TCAACACCAC CCACGGTGCG CAGGCCGTTG CCGATTCCTA CTCGATTCGC
AGGAACACTC TGATCAACAA CGTCGCTTAC TACACCACAG CCTCCGGCGC GAGAGCTGCC
GTAGACGGTA TCATAGCGAT GTCCAAGTCG AAGCTGGAAG TCAACTCGAT CCAGCACTAC
TTGAAATAA
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| Protein sequence | MPKRTDIKKI LIIGAGPIVI GQACEFDYSG TQACKALKEE GFEVVLLNSN PATIMTDPDF
ADFTYIEPVT PEILAAIIEK ERPDALLPTL GGQTALNTAV AVAENGTLEK FGVELIGAKL
PAIKKAEDRT LFKEAMVRIG LDVPRSGLAH NYQEAMEVIK FVGFPAIIRP SFTLGGTGGG
IAYNMEEYER MSMAGIEASP TDEILVEESL IGWKEYELEV MRDTADNVVI ICSIENFDAM
GVHTGDSITV APAQTLTDKE YQILRDASLK IIREIGVDTG GSNIQFGTNP KNGRLIVIEM
NPRVSRSSAL ASKATGFPIA KIAAKLAVGY TLDEITNDIT KETPACFEPT IDYVVTKIPR
FTFEKFPAAD ATLTTQMKSV GEVMSIGRTF KESFQKALRS LEIGSCGFES KFFGVGGDTR
RALTEKERNL LNDKLRTPNC DRLWYVGDAF RCGMSVEEIY ALTAIDPWFL NNIRQIIEME
EELKQINIKN ESGEKLHDIL WDAKRYGFSD KFLSQLWKIT EAEVRQLRLS VGVKPVFKRV
DTCAAEFVAH TPYLYSTYEE ECEAEPTDKK KIIILGGGPN RIGQGIEFDY CCVHGVFALS
EDGYETIMVN CNPETVSTDY DTSDRLYFEP LTFEDVLNIV DVEKPTGVIV QFGGQTPLKL
AVALEKAGVP IIGTSPDAID RAEDRERFQE MLQKLKLRQP ENGTARSFEE SEVVAERIGY
PVVVRPSYVL GGRAMEIVYD VDNLRRYMHT AVQASPEHPI LIDKFLDEAI EIDVDALCDG
QVAVIGGIME HIEEAGIHSG DSACSLPPYS ISKEIVEEIR RQTKMMALEL NVKGLMNVQF
AVKGNDIYII EVNPRASRTS PFVSKATGRP LAKIAARVMA GKTLAELGVT DEIVPVHISV
KESVFPFAKF PGVDTILGPE MKSTGEVMGI GDTFAKAYAK AQMGANVKLP TSGKVFISVK
DTDKKHIVSA AKRLYDQGFE LVATRGTASY LQEKGIPVQV VNKVIEGRPH IVDAIKNNEI
CMVINTTHGA QAVADSYSIR RNTLINNVAY YTTASGARAA VDGIIAMSKS KLEVNSIQHY
LK
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