Gene Gbem_1517 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagGbem_1517 
Symbol 
ID6781505 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameGeobacter bemidjiensis Bem 
KingdomBacteria 
Replicon accessionNC_011146 
Strand
Start bp1755549 
End bp1757543 
Gene Length1995 bp 
Protein Length664 aa 
Translation table11 
GC content64% 
IMG OID642767511 
ProductSSS sodium solute transporter superfamily 
Protein accessionYP_002138331 
Protein GI197117904 
COG category[R] General function prediction only 
COG ID[COG4147] Predicted symporter 
TIGRFAM ID[TIGR00813] transporter, SSS family 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000116414 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACGATGA AAAAGATATT TATTGCAGCC ACCCTGGCCC TCTCCGTTGC CGCTGCCGCC 
TTTGCCGAAG AGCAAAAGGC AGCCCCGGCC GCAGCCCCCG CGGTGAGCGC ACCCGCAGCT
CAGGGCGCAG CCCCCGCGGT AGCAGCCCCC GCAGCCCAGG TCAACCAGTC CCAGGCGGTT
GCAACGCCCG CCCCGGCCAA GCCCGCTCCG GCCAAAAGGG AGTTAAAGAC CAACAGGACC
ATCACCATCG GCATGTTCAT GGTGATCATC GCCATCACCA TGGGTGTGGT AGTCTGGGCT
GCCAAGCAGA CCAAGACAGC TTCCGACTTC TACGCCGCAG GCGGCGGCAT CACGGGGACC
CAGAACGGCT GGGCCATCGC CGGCGACTAC ATGTCGGCAG CCTCCTTCCT GGGGATTTCC
GGCCTCATCT CGCTCTACGG CTATGACGGG TTCATGTACT CGGTCGGCTG GCTGGTGGCC
TACATCACGG TGCTCCTGAT CGTGGCCGAA CCGTGCCGCA ACGCGGGCAA GTACACCCTG
GGGGATATCC TCTCCTTCCG TACTTCCCCG AAACCGGTGC GCGCCTTCGC CGCCCTCTCC
ACCGTCGCGG TCTCCACCTT CTACCTCACC GCCCAGATGG TCGGTGCAGG CAAGCTGATG
GCGCTTCTGG TCGGCATCCC CTATAAGATG TCCATCATTG GCGTCGGCAT CCTCATGGTC
GGCTACGTCG TCTTCGGCGG CATGGTCGCC ACCACCTGGG TACAGATCAT CAAGGCAGGC
CTCCTCATGT CGGGCGCCTT CCTGCTCTCC TTCCTGGTCA TGATCAAGGC AGGCTTCAAC
CCGATCGGCT TCTTCTCCAC CATCGTCAAC AGCCCCGACA TCCAGGACCA CGTCTCCAAG
CTGGTATTGA AAGACGGCGT CATCCTTGCC GGCGCGGACG CAGGACAGCG CTTCCTTGAG
CCTGGCCTCT ACATGAAGAA CCCGCTGGAC CAGATCTCCC TGGGGATGGC CCTCGTGCTC
GGCACCGCCG GCATGCCGCA CATCCTGATG CGCTTTTTCA CCGTCCCGAC CGCACAGGCG
GCGCGTAAAT CGGTCATCAT CGCGATGTTC ATCATCGGCG GCTTCTACGT CCTGACCACC
CTGCTCGGCT TCGGCGCAGC CATCCACCTC ACCCCGCAGG GGATCACCCA GGTCGACCCG
GGCGGCAACA TGGCTACCCT CATGCTGGCT CAGCAGATGG GCGCCGACAT CGCACCCGTC
TTCGGCGACC TCTTCCTCGC CTTCCTGTGC GCCGTCGCCT TCGCCACCAT CCTCGCCGTC
GTCTCCGGCC TGGTGCTCGC GGCCTCCGCG GCCATCGCAC ACGACATCTA CGTCAACGTG
ATCAAAGACG GCCACGCCGA CCAGCACGAG CAGGTCTTCG CGGCACGCGC CACCTCCTTC
GTGGTAGGCG CCTGCGGCAT CATGATCGGC CTCGCGGCCG AGAAGCAGAA CGTCGCTCAC
CTGGTGGCAC TCGCCTTCGC GGTCGCCGCT TCCGGCAACC TGCCGGTCGT CATCCTCTCG
CTCTTCTGGA GGAAGTTCAA CACCGCCGGC GTCATCTCCG GCCTTTTGGT CGGCACCATC
GCCTCCATCG CGCTGGTGAT GGTCTCCCCC AACATGACCT ACCCGAAAGT GGTGGCCGAA
GGCGCCAAGA AGGTGGTCGT CGCCATGGAG AAGAAGCAGG CCGCTCTGCC GGCAGGCGAG
ACCCTCTCCG AGAAAGACGC CAAGGCGCTC GCCAAGGCGA AGGTGGACGC ACAGCAGACC
GGCACCTCCA TGGTCGGCCT GGAGAAGCCG CTCTTCACTC TGAAGAACCC GGGCATCGTC
TCCATCCCGC TGGGCTTCAT GGCCGCCATC CTCGGTTGCC TCGCCTTCCC GAACAGGCGT
TCCGAAGAGA TGTTCGACGA GGTCTACGTA CGCCAGAACA CCGGTTTGGG TATGGCCAAG
GCAGTCGAAC ACTAG
 
Protein sequence
MTMKKIFIAA TLALSVAAAA FAEEQKAAPA AAPAVSAPAA QGAAPAVAAP AAQVNQSQAV 
ATPAPAKPAP AKRELKTNRT ITIGMFMVII AITMGVVVWA AKQTKTASDF YAAGGGITGT
QNGWAIAGDY MSAASFLGIS GLISLYGYDG FMYSVGWLVA YITVLLIVAE PCRNAGKYTL
GDILSFRTSP KPVRAFAALS TVAVSTFYLT AQMVGAGKLM ALLVGIPYKM SIIGVGILMV
GYVVFGGMVA TTWVQIIKAG LLMSGAFLLS FLVMIKAGFN PIGFFSTIVN SPDIQDHVSK
LVLKDGVILA GADAGQRFLE PGLYMKNPLD QISLGMALVL GTAGMPHILM RFFTVPTAQA
ARKSVIIAMF IIGGFYVLTT LLGFGAAIHL TPQGITQVDP GGNMATLMLA QQMGADIAPV
FGDLFLAFLC AVAFATILAV VSGLVLAASA AIAHDIYVNV IKDGHADQHE QVFAARATSF
VVGACGIMIG LAAEKQNVAH LVALAFAVAA SGNLPVVILS LFWRKFNTAG VISGLLVGTI
ASIALVMVSP NMTYPKVVAE GAKKVVVAME KKQAALPAGE TLSEKDAKAL AKAKVDAQQT
GTSMVGLEKP LFTLKNPGIV SIPLGFMAAI LGCLAFPNRR SEEMFDEVYV RQNTGLGMAK
AVEH