| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Gbem_1336 |
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| Symbol | |
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| ID | 6781323 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Geobacter bemidjiensis Bem |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011146 |
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| Strand | - |
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| Start bp | 1539236 |
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| End bp | 1541242 |
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| Gene Length | 2007 bp |
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| Protein Length | 668 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 642767330 |
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| Product | DNA ligase, NAD-dependent |
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| Protein accession | YP_002138151 |
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| Protein GI | 197117724 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0272] NAD-dependent DNA ligase (contains BRCT domain type II) |
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| TIGRFAM ID | [TIGR00575] DNA ligase, NAD-dependent |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGATAAAA CTGCTGCGGC TCAAAGGATC AAGTGGTTAA GCTCGGAGAT CGAGCGCCAC
AACCGGCTCT ACTACGAACA GGACATGCCG GAGATAACCG ATGCCGAGTA CGATGCGCTC
TTCCGCGAGT TGAAGGAGCT TGAGGCCTCC TATCCCGACC TCGCCCTCCC CGATTCCCCG
ACCGGCCGGG TCGGCGGGCG CCCGGTGGCG AAGTTCACCC AGGTGCGCCA CACAACGCCC
ATGCTTTCGC TGGAAAACGC CTTCACGGAG AAGGACATCG TCGACTTCGA TGACCGGATG
AAGCGCTTCC TGGGGCTTTC AGGCGCAGAG GAGATCGGTT ATGTTTGCGA GCCGAAGATG
GACGGCGTCG CGGTGGAGTT GGTGTACCGT GATGGGCTCC TCGCCATCGG CTCTACCCGC
GGCGACGGGT TGGTGGGCGA GGAGGTGACC CAGAACCTGA AGACCATCAA GGACATACCG
TTGCGGCTGC AGACGGAGGA GCCTCCGGGG CTCTTGACGG TGCGGGGTGA GGTGTACCTG
CCGCTGGAAC CTTTCAGGAA GTTCAACCAG GAGCGCGAGG AAGCGGGGGA GCCACCCTTC
GCCAACCCGA GGAACGCCGC GGCAGGATCC CTGCGCCAGC TCGACTCGAA GATCACCGCA
AAGCGGCCGC TCAGCATCTT CTGCTACGCC CCTGGCGAGG TGGACGGAGT CGCCTTCCAA
TCGCAAAGCG ATTTCCTCAG CACCATCCCC ACCTGGCGCA TCCCGGTCAA CCCGCTGACG
AGGCTCGTCC CGGGCGTGCA GGGGGTGCTC GACTACTACA ACGAGATGAT GGAAAAGCGC
GACGATCTCC CCTACGAGAT CGACGGCGTG GTAGTGAAGG TGGATCGGTT TTCCCTGCAG
CGCGACTTGG GAGAGAAGAG CCGCTCGCCG CGCTGGGCCA TCGCCTGGAA GTTCCCCCCG
CGCCAGGCGA CCACGGTGGT CAACGACATC GTGCCCCAGG TGGGTCGGAC CGGCGTCATC
ACCCCTGTGG CGCACCTTGA GCCGGTGAAC GTCTCGGGCG TCATGGTCTC CCGCGCCACA
CTGCACAACT GGGAGGAGAT GGAGCGCAAG GACATCCGCA GGGGCGATAC CGTAGTGGTC
GAGCGCGCCG GCGACGTCAT TCCCGCCGTG GTGCAGGTGC TGGTCGAGAA AAGGCAAGGG
AGCGAGACGC TGCTTCCGGT ACCGCAGGCG TGTCCTGTGT GCGGCGGCGA AGTGGTCAGG
ATACCGGGCG AGGTCGCCGT GCGCTGCGTC GGCCTCAACT GTCCCGCGCA GGCATTGGAA
CGGGTGAAGC ACTTTGCCGC CCGCCGCGCC ATGGACATAG ACGGGCTGGG GGAGAAGTTC
ATCGAGCAGC TTCTGAACCT GAAGCTGATA CGGAACGTCG CCGACATCTA CCGGCTGACT
GAAGAGGACT TCATGCAGTT CGAGCGCATG GGGAAGAAGC TGGCGGAGAA CCTTCTGAAT
TCCATCGCCG CCAGCAAGGA GCGGGAGCTT TCGCGCCTGA TCTTCGCGCT CGGGATACGG
CACGTGGGGG AGCACACCGC GAAGCTTTTG GCCAGCGCCT TCGGGAGCAT GGAGAATCTC
GCGGCGGCGA GCGAAGAGGA GTTGACCTCC ATCCGCGAAG TCGGGCCGCA GGTGGCGGCT
AGCATCGCGG ATTTCTTCAA GAGCGAAGAG AACCTGGAAG TGCTCAGGGA GTTAAAGGAG
CACGGGGTTA ATCCCAGGGT GGAAGAGAAG CGGGTTGGCG GCAGGTTCAC CGGCAAGACC
TTCGTCTTCA CCGGCGCCCT GGAGAAGTTC ACGCGCGACG AGGCGAAGAA GATGGTGGAG
TTGGAGGGGG GGCATGCAGC CGGCTCCGTG TCCAAGAAGA CCGACTACGT CGTCGCCGGC
GCCGATGCCG GGAGCAAGCT GGATAAAGCG CAGCAGCTGG GCGTGCGGGT GTTGAGCGAG
GATGATTTTC TGGAGTTGAT GCAGTAG
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| Protein sequence | MDKTAAAQRI KWLSSEIERH NRLYYEQDMP EITDAEYDAL FRELKELEAS YPDLALPDSP
TGRVGGRPVA KFTQVRHTTP MLSLENAFTE KDIVDFDDRM KRFLGLSGAE EIGYVCEPKM
DGVAVELVYR DGLLAIGSTR GDGLVGEEVT QNLKTIKDIP LRLQTEEPPG LLTVRGEVYL
PLEPFRKFNQ EREEAGEPPF ANPRNAAAGS LRQLDSKITA KRPLSIFCYA PGEVDGVAFQ
SQSDFLSTIP TWRIPVNPLT RLVPGVQGVL DYYNEMMEKR DDLPYEIDGV VVKVDRFSLQ
RDLGEKSRSP RWAIAWKFPP RQATTVVNDI VPQVGRTGVI TPVAHLEPVN VSGVMVSRAT
LHNWEEMERK DIRRGDTVVV ERAGDVIPAV VQVLVEKRQG SETLLPVPQA CPVCGGEVVR
IPGEVAVRCV GLNCPAQALE RVKHFAARRA MDIDGLGEKF IEQLLNLKLI RNVADIYRLT
EEDFMQFERM GKKLAENLLN SIAASKEREL SRLIFALGIR HVGEHTAKLL ASAFGSMENL
AAASEEELTS IREVGPQVAA SIADFFKSEE NLEVLRELKE HGVNPRVEEK RVGGRFTGKT
FVFTGALEKF TRDEAKKMVE LEGGHAAGSV SKKTDYVVAG ADAGSKLDKA QQLGVRVLSE
DDFLELMQ
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