| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Gbem_0953 |
|---|
| Symbol | secY |
|---|
| ID | 6783795 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Geobacter bemidjiensis Bem |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011146 |
|---|
| Strand | + |
|---|
| Start bp | 1106743 |
|---|
| End bp | 1108050 |
|---|
| Gene Length | 1308 bp |
|---|
| Protein Length | 435 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 642766930 |
|---|
| Product | preprotein translocase subunit SecY |
|---|
| Protein accession | YP_002137770 |
|---|
| Protein GI | 197117343 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0201] Preprotein translocase subunit SecY |
|---|
| TIGRFAM ID | [TIGR00967] preprotein translocase, SecY subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.0415377 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGATAGAAG CCTTCCAGAA CATTTTCAAG ATCCCCGAGC TTAAAAAGAA GGTTCTCTTT
TCGCTGGCCA TGCTGGCCGT CTACCGGATA GGGTGTCATA TCCCTACCCC GGGCATCGAC
GCCCAGGCCC TCGCCCAGTT CTTCAAGGCT GCGCAGGGCA CGCTGCTCGG TATGTTCGAC
ATGTTTTCTG GCGGGGCTCT CGAGAAGCTC ACCGTCTTCG CCCTCGGCAT CATGCCGTAT
ATCTCCTCCT CCATCATCTT CCAACTCCTC ACCGTTGTGC TTCCGGCCGT GGAGAAGCTT
TCCAAGGAAG GTGACGCTGG AAGGAAGAAG ATCATCCAGT ACACCCGCTA CGGCACCATC
GTGCTGGCGG TGGTTCAGGC GTTCGGCATC AGCATCGGCC TTGAGGCCAT GCGCGGTCCG
GCCGGCGAGC TGGTAGTTCC GAACCCCGGC TGGGGCTTCA GGCTGATGAC GGTGATCACC
CTCACGGCTG GCACCGCCTT CATCATGTGG CTCGGCGAGC AGATGTCTGA GAAGGGTATC
GGCAACGGCA TCTCCCTGAT CATCTTCGCC GGCATCGTGG CCCGCATCCC GACCGCGATC
GGCAACAGCT TCCGTCTGAT CAAGACGGGC GAGCTCTCCC TGTTCGTGCT GCTCCTGATC
GCCGCGGTGA TGTTCGCGGT GATCGCGGCG GTGGTATTCA TGGAGCGCGG CCAGCGCAGG
ATTCCGATCC ACTACGCCAA GAGGGTGGTG GGGCTCAAGA CCGTAGGCGC GCAGAGCTCG
CACCTGCCGC TCAAGGTGAA CATGGCCGGC GTCATCCCGC CGATCTTCGC CTCGTCGATC
ATCATGTTCC CGGCCACGGT GGGCAACTTC ATCGACGTCC CCTGGGTGCA GGCGGCCTCC
AAGCAGTTGG CCCCCGGAAA GTTGCTTTAC GAGGTTTTAT TTGTTGCCTT TATCGTCTTT
TTCTGTTACT TCTACACGGC TGTGACTTTC AACCCGGTTG ATGTCGCCGA TAACGTCAAG
AAACAGGGGG GGTATGTGCC CGGGATCCGT CCCGGTAAGG AGACCTCCGA CTTCCTCGAC
GCGGTGCTGA CCAAGTTGAC CTTCGCCGGC GCCATTTACA TCTCCGCGGT CTGCGTGCTT
CCTTCGATTC TGATTGGGAA ATTCAACCTC CCCTTCTATT TTGGCGGCAC TTCCCTGCTG
ATCGCCGTCG GTGTCGGCAT GGACACTCTG TCGCAGATAG AGGCGCACCT GATTACCCGA
AGCTACGAAG GGTTCATGAA GGGCGTGCGC ATCCAGGGCA GAAGGTAA
|
|---|
| Protein sequence | MIEAFQNIFK IPELKKKVLF SLAMLAVYRI GCHIPTPGID AQALAQFFKA AQGTLLGMFD
MFSGGALEKL TVFALGIMPY ISSSIIFQLL TVVLPAVEKL SKEGDAGRKK IIQYTRYGTI
VLAVVQAFGI SIGLEAMRGP AGELVVPNPG WGFRLMTVIT LTAGTAFIMW LGEQMSEKGI
GNGISLIIFA GIVARIPTAI GNSFRLIKTG ELSLFVLLLI AAVMFAVIAA VVFMERGQRR
IPIHYAKRVV GLKTVGAQSS HLPLKVNMAG VIPPIFASSI IMFPATVGNF IDVPWVQAAS
KQLAPGKLLY EVLFVAFIVF FCYFYTAVTF NPVDVADNVK KQGGYVPGIR PGKETSDFLD
AVLTKLTFAG AIYISAVCVL PSILIGKFNL PFYFGGTSLL IAVGVGMDTL SQIEAHLITR
SYEGFMKGVR IQGRR
|
|---|
| |