| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Gbem_0926 |
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| Symbol | rpoB |
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| ID | 6783768 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Geobacter bemidjiensis Bem |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011146 |
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| Strand | + |
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| Start bp | 1084862 |
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| End bp | 1088977 |
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| Gene Length | 4116 bp |
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| Protein Length | 1371 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 642766903 |
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| Product | DNA-directed RNA polymerase subunit beta |
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| Protein accession | YP_002137743 |
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| Protein GI | 197117316 |
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| COG category | [K] Transcription |
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| COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
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| TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type
[TIGR02013] DNA-directed RNA polymerase, beta subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCTTATT CAATCGCGAA TAACCCCCTG TTGCGCAAGA ACTTCGCCAA GATCCACAAG
ATCATCGACA TACCGAACCT CATCGACATC CAGAAAAATT CCTACAAGAG ATTCCTCCAA
CTAGACACTC CCGTAGACGC ACGCAAAAAT TCCGGCCTCG AAGCCGTTTT CCGCAGCGTC
TTCCCGATCA GGGACTTCAG CGACACCGCC TCGCTTGAGT ACGTTTCGTA TTCGCTCGGC
GCGCCCAAGT ACGACGTGGA GGAGTGCCAC CAGCGCGGCA TGACCTTCGC GGCCCCGATG
AAGGTGAAGG TGAGGCTGGT GGTGTGGGAT GTGGCGAAGG ACCCCGGTAC CAGATCGATC
CGCGATATCA AGGAGCAGGA GGTTTATTTC GGCGAAATCC CGCTGATGAC CGACAACGGG
ACCTTTATCA TAAACGGCAC CGAGCGCGTC ATCGTGAGCC AGCTGCACCG CTCTCCGGGC
GTTTTCTACG ACCACGACAA AGGGAAGACC CACTCCAGCG GCAAGGTGCT CTACTCCGCT
CGCGTGATTC CGTACCGCGG CTCGTGGCTT GACTTTGAAT TTGACCATAA AGACATCCTT
TATGTTCGCA TAGACAGACG GCGCAAGATG CCGGCCACCG TGCTCCTCAA GGCGCTCGGC
TACTCCAATG ACGCGCTGAT CAACTACTTC TACAAGTCCG AAGAGGTAAA GCTCGGCGAC
AACGGCGCCA TGACCAAGCT CGCCGACGCT GAGCTTCTCT CGAACCAGAA GGCTACCGCT
GACATCGTCG ACCCGGCTAC CGGCGAGGTG ATCCTCAAGG CGAACCGCAA GTTCACCAAG
GCGGCGCTCA GGAAGATGGC CGAGCACGGG ATCAAGGAGA TCCCCATCTC CGAGGAGGAG
GTGGTTGCAA AGGTCGCTTC GCACGACATC TACGACCCGG CTACCGGCGA GATCATCGTG
GAGTGCAACG AGGAGCTCAC CCAGGCCAAA CTCGAGGAGA TCATCCAGAA GGGGATCACC
ACCTTCCAGG TGCTCTTCAT CGACAACCTG CACGTCACCT CCAGCTTCCG CGACACCATC
CTGATCGACA AGATCGGCTC CACCGACGAG GCGCTGATCG AGATCTACCG CCGTCTGCGT
CCGGGCGACC CGCCGACGCT TAAGAGCGCG CTGGTTCTCT TCGAGAACCT GTTCTTCAAC
GCGGAGCGCT ACGACCTCTC CGCCGTCGGC CGCCTGAAGC TCAACTACAA GCTGGGCGTA
GACGTGCCGC TTGACTGCAT GACGCTCACC CGCGAGGACA TCCTCGAGGT GGTGCGCTAC
CTGATCGAGC TGAAAAACGG CAAGGGGAAC ATCGATGACA TCGACCACCT GGGCAACCGT
CGTGTCCGCG CCGTGGGCGA GCTTTTGGAA AACCAGTACC GCATCGGCCT GGTCAGGATG
GAGCGCGCCA TCAAGGAGCG CATGAGCCTG CAGGAAGTCG AGAACCTGAT GCCGCACGAC
CTGATCAACT CCAAGCCGGT CTCCGCAGTA GTGAAGGAGT TCTTCGGCTC CTCGCAGCTC
TCCCAGTTCA TGGACCAGAC CAACCCGCTC TCCGAGGTCA CGCACAAGCG CCGTCTCTCG
GCTCTGGGAC CGGGGGGCCT AACCCGCGAG CGCGCGGGCT TCGAAGTCCG CGACGTACAC
CCGACCCACT ACGGCCGCGT CTGCCCGATC GAGACCCCTG AGGGTCCGAA CATCGGTCTC
ATCGCGTCGC TCTCTACCTA CGCAAGGATC AACGAGCACG GCTTCGTCGA GACGCCGTAC
CGCGTGGTCA GTGAAGGGAA GGTGACCGAC GAGGTCCGCT TCTTCTCGGC TCTCGAGGAG
GAAGGGCACG CCATCGCCCA GGCCAACGCC GAGATCGATA AAGACGGGCG CTTCGCAGCT
GACTACATCT CGGCCAGGAA ATCCGGCGAG TTCGTCCTCG TGGGACGCGA CGAGCTGGAG
CTTATGGACG TGGCCCCGAT GCAGCTGGTT TCCGTCGCGG CATCGCTGAT CCCGTTCCTC
GAGAACGACG ACGCGAACCG CGCACTGATG GGTTCCAACA TGCAGCGCCA GGCCGTTCCG
CTTCTGCGCG CCGACTCTCC GCTGGTAGGA ACCGGGATGG AGCGCGTCGT CGCACGCGAC
TCCGGTGTTT CCTCGGTTGC CCGCCATAAC GGGGTGGTGG AGAGCGTCGA TGCCTCCCGC
ATCGTCGTCA AAATCGACGA GGATCAGTAC GACGCGACCG GCACCGGCGT CGACATCTAC
AACCTGATCA AGTTCGCCCG CTCCAACCAG AACACCTGCA TCAACCAGAG GCCGGTGGTA
AAGGTAGGCG ACCACGTGAA GGCTGGCGAC ATCATCGCCG ACGGCCCCTC CACCGACATG
GGCGAGCTGG CTCTGGGGCA GAACGTGCTG ATCGCGTTCA TGCCGTGGGG CGGCTACAAC
TACGAGGACT CCATCCTCAT CTCGGAGCGC CTGGTAAAAG ACGACCGCTA CACCTCGATC
CACATCGAGG AGTTCGAGGC CGTGGCCCGC GACACCAAGC TCGGCAAGGA GGAGATCACC
TCCGACATCC CGAACCTGGG CGAAGAGACC CTGAAGGACC TGGACGAGTC GGGCATCATC
AGGATCGGCG CTGAAGTCCG TCCGGGCGAT ATCCTGGTCG GCAAGATCAC TCCGAAGGGC
GAGACCCAGC TCTCCCCGGA AGAGAAACTC CTGCGCGCCA TCTTCGGCGA GAAGGCGGGC
GACGTGCGCG ACACCTCGCT GCGCGTACCG CCGGGGGTGG AAGGTACCGT CATCGGTGCC
AAGATCTTCT CCCGTAAGGG TGCCGACAAG GACGCCCGTA CCGAGATCAT CGAGAAGGCC
GAGGAGATGC GGCTTCGGAA AGACGAGCAG GACGAGATCC GGATCATCCG CGATTCGGCT
ATCGGGAAGC TGAAGAAACT GCTGGTGGGC AAGGCCGCCG CAGTGAAGAT AGAAGGGAGC
GACGGCAAGG TGCTGATCCC GAAAGGGGCG GCCATCACCG AGGAGATGCT GAAATCGTTC
TCCATGGACC GCTGGGACGA GATCTCCATC GCCGACGACG ACACCATCGA CGAGAAAGTG
GCCCAGACGC TCTCCACGCT GAACCAGCAG ATCGACATCA TCAAGTACGT CTTCGACGAC
AAGGTGCAGA AGCTGCGCCG CGGCGACGAT CTGCCGCCGG GCGTCATCAA GATGGTCAAG
GTCTACATCG CCATCAAGCG TAAGCTCCAG GTGGGCGACA AGATGGCGGG CCGCCACGGT
AACAAGGGTG TCGTTTCCAG GATCCTCCCG GAAGAGGACA TGCCGTACAT GGAAGACGGC
CGTCCGGTAG AGATCGTGCT GAACCCGCTG GGCGTACCTT CCCGTATGAA CGTTGGGCAG
ATCCTCGAGA TGCACCTCGG CTGGGGCGCC AAGGGGCTCG GCTGGAAGAT CGAGGAGTTC
CTCGAGAAGA ACGCCCCGCA CGATGAGATC AAGAGGTTCC TGAAGGGGGC GTACGACAAC
CCGGAAATGG ACCGCTTCCT CGATACTCTG GAAGGTGAGG AGCTCCTCAA CCTGGCACGA
CGCCTGAAGC GCGGCATCCC CATGTCGTCG CCGGTCTTCG AGGGTGCGAG CGAGGAGTCG
ATACAGTCGA TGCTGACCCA TGCAGGCTTC AGCACCACCG GTCAGGTCAC CCTCTACGAC
GGCAAGAGCG GCGACAAGTT CATGCACCAG GTCACCGTCG GGATCATGTA CTTCTTGAAG
CTGCACCACC TGGTCGACGA CAAGATCCAC GCGAGGAGCA TCGGGCCCTA CTCTCTGGTC
ACCCAGCAGC CGCTGGGGGG CAAGGCGCGG TTCGGCGGTC AGAGGCTCGG GGAGATGGAG
GTCTGGGCGA TGGAGGCCTA CGGCGCCGCA TACGCGCTGC AGGAATTCCT CACCGTCAAG
TCCGACGACG TGGCCGGCCG CACCAGGATG TACGAGGCCA TCGTCAAAGG GAAGCACACC
CTGGAGCCGG GCCTGCCCGA GTCGTTCAAC GTCCTCATCA AGGAACTCCA GTCCCTTGGC
CTCGACGTGG AACTCCTGGA AGGCGACGAG GACTAA
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| Protein sequence | MAYSIANNPL LRKNFAKIHK IIDIPNLIDI QKNSYKRFLQ LDTPVDARKN SGLEAVFRSV
FPIRDFSDTA SLEYVSYSLG APKYDVEECH QRGMTFAAPM KVKVRLVVWD VAKDPGTRSI
RDIKEQEVYF GEIPLMTDNG TFIINGTERV IVSQLHRSPG VFYDHDKGKT HSSGKVLYSA
RVIPYRGSWL DFEFDHKDIL YVRIDRRRKM PATVLLKALG YSNDALINYF YKSEEVKLGD
NGAMTKLADA ELLSNQKATA DIVDPATGEV ILKANRKFTK AALRKMAEHG IKEIPISEEE
VVAKVASHDI YDPATGEIIV ECNEELTQAK LEEIIQKGIT TFQVLFIDNL HVTSSFRDTI
LIDKIGSTDE ALIEIYRRLR PGDPPTLKSA LVLFENLFFN AERYDLSAVG RLKLNYKLGV
DVPLDCMTLT REDILEVVRY LIELKNGKGN IDDIDHLGNR RVRAVGELLE NQYRIGLVRM
ERAIKERMSL QEVENLMPHD LINSKPVSAV VKEFFGSSQL SQFMDQTNPL SEVTHKRRLS
ALGPGGLTRE RAGFEVRDVH PTHYGRVCPI ETPEGPNIGL IASLSTYARI NEHGFVETPY
RVVSEGKVTD EVRFFSALEE EGHAIAQANA EIDKDGRFAA DYISARKSGE FVLVGRDELE
LMDVAPMQLV SVAASLIPFL ENDDANRALM GSNMQRQAVP LLRADSPLVG TGMERVVARD
SGVSSVARHN GVVESVDASR IVVKIDEDQY DATGTGVDIY NLIKFARSNQ NTCINQRPVV
KVGDHVKAGD IIADGPSTDM GELALGQNVL IAFMPWGGYN YEDSILISER LVKDDRYTSI
HIEEFEAVAR DTKLGKEEIT SDIPNLGEET LKDLDESGII RIGAEVRPGD ILVGKITPKG
ETQLSPEEKL LRAIFGEKAG DVRDTSLRVP PGVEGTVIGA KIFSRKGADK DARTEIIEKA
EEMRLRKDEQ DEIRIIRDSA IGKLKKLLVG KAAAVKIEGS DGKVLIPKGA AITEEMLKSF
SMDRWDEISI ADDDTIDEKV AQTLSTLNQQ IDIIKYVFDD KVQKLRRGDD LPPGVIKMVK
VYIAIKRKLQ VGDKMAGRHG NKGVVSRILP EEDMPYMEDG RPVEIVLNPL GVPSRMNVGQ
ILEMHLGWGA KGLGWKIEEF LEKNAPHDEI KRFLKGAYDN PEMDRFLDTL EGEELLNLAR
RLKRGIPMSS PVFEGASEES IQSMLTHAGF STTGQVTLYD GKSGDKFMHQ VTVGIMYFLK
LHHLVDDKIH ARSIGPYSLV TQQPLGGKAR FGGQRLGEME VWAMEAYGAA YALQEFLTVK
SDDVAGRTRM YEAIVKGKHT LEPGLPESFN VLIKELQSLG LDVELLEGDE D
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