| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Gbem_0573 |
|---|
| Symbol | |
|---|
| ID | 6783406 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Geobacter bemidjiensis Bem |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011146 |
|---|
| Strand | + |
|---|
| Start bp | 696093 |
|---|
| End bp | 696950 |
|---|
| Gene Length | 858 bp |
|---|
| Protein Length | 285 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 642766546 |
|---|
| Product | putative RNA polymerase, sigma 70 family subunit |
|---|
| Protein accession | YP_002137397 |
|---|
| Protein GI | 197116970 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
|---|
| TIGRFAM ID | [TIGR02392] alternative sigma factor RpoH
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.00000689788 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACACACA GCATGCCGGT ACCTATCGAC AACCTGACCC TTTACCTCGC GGAAATCAAC
CGTTTTCCGC TGCTTACGGC GGACGAGGAA ATGGATTTGG CTGGCAGGTT CCGTCGCGAG
GGAGACCTTG AGGCGGCGCA CCGGCTGATC ACCGCGAACC TTCGTTTCGT GGTGAAAATA
GCAGGCGAAT ACCGTTCCTA CGGGATGAAG ATGCTCGACC TGATCCAGGA AGGGAATATC
GGGCTGATGA TGGCGGTGAG AAAGTTCGAC CCTGACAAGG GGGTGCGGCT CATCTCCTAC
GCGGTCTGGT GGATTAGGGC CTACATCCAG AACCACATCA TCTCCGCCTG GAGCCTGTTA
AAGATCGGGA CCACGCAGGC GCAGAGAAAG CTCTTCTTTA AGCTGAACCA GGCGAAGCAG
GCGATCGTCA ACATGACCGG CGAGGGCGAC CTGCACGCGG CGGCGATATC GCTGGACGTG
AAGGACAACG AGGCCCGGGA GATGGAACAG CGCCTCCGGG GCGAATTGTC GCTCGACGTC
GAGATGTTCG AAGGCGAGGG AGGGGGGACC TTCCTGGAGA GCCTTCCCGA CCTGCGGCAG
AACCAGGAGG AGATGCTGGC CGAGCGCCAG GAGACCACCA TCCTAGAGCG AAACGTAGCC
AGCGCGCTGG AAAACCTGAA CGAGAAAGAG AAGTTCGTCA TCGAGCAGCG CGTAGCCGCG
GAGGACCCGA TGACCCTGCA GGAAATAGCC GATCACTTCT CCATCTCGCG CGAGCGGGTC
CGCCAGATAG AAGAGGGTGC GCTCAAGAAG ATGAAGCGCT TCCTCGCCCC GCTGGTGATG
GAAGCCGAGG CGGCGTAA
|
|---|
| Protein sequence | MTHSMPVPID NLTLYLAEIN RFPLLTADEE MDLAGRFRRE GDLEAAHRLI TANLRFVVKI
AGEYRSYGMK MLDLIQEGNI GLMMAVRKFD PDKGVRLISY AVWWIRAYIQ NHIISAWSLL
KIGTTQAQRK LFFKLNQAKQ AIVNMTGEGD LHAAAISLDV KDNEAREMEQ RLRGELSLDV
EMFEGEGGGT FLESLPDLRQ NQEEMLAERQ ETTILERNVA SALENLNEKE KFVIEQRVAA
EDPMTLQEIA DHFSISRERV RQIEEGALKK MKRFLAPLVM EAEAA
|
|---|
| |