| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Gbem_0472 |
|---|
| Symbol | |
|---|
| ID | 6783299 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Geobacter bemidjiensis Bem |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011146 |
|---|
| Strand | + |
|---|
| Start bp | 570523 |
|---|
| End bp | 571977 |
|---|
| Gene Length | 1455 bp |
|---|
| Protein Length | 484 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 642766441 |
|---|
| Product | lytic transglycosylase catalytic protein |
|---|
| Protein accession | YP_002137297 |
|---|
| Protein GI | 197116870 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0741] Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATCAAAA CGACCCTTAT CATACTGTCA CTGTTGTTCT CTACCACCGC TTTCGCCGCG
CCGGCCAGCA CGGCCGCCGA ACAGCGAGAC CTGGCCCGGG CCATGCAGGT CGCCTCCAAC
TCCTCCGACG TCGCGCTCTC CAAAGGGCTC GGCCTCACCC CCTCCGATTT TTCCGACGAC
GAAGATTTCA GCGACGATTC CCAGGATTAC GACCTTAAGC TGCCGGAGAT GGAACTTCCC
GACTCCGATA TTCCGCTTAC CTTCAACACC AAGGTGGACT ACTTCGTCCG CTACTTCCAG
GGGCCGGCGC GCCCGGTCTT CGCCAAGTGG CTCTCCCGCA GCGAGCGCTA TATCCCGATG
ATGAAGACCG TGCTCAAGAA GGAAGGGCTC CCGGAGGATC TGGTCTACCT GGCCATGATC
GAGAGCGGAT TCATGACCCA CGCGGTGTCG GTGGCGAGCG CGGTCGGCCC GTGGCAGTTC
ATGCCGGCAA CGGGAAAGCG CTATGCGCTG AGGATCGACC CCTGGGTCGA CGAGAGACGC
GATCCCCTGA AGGCCACGAT CGCCGCGGCG CTCTATTTAA AAGAGCTCTA TGCCCTGTTC
AACAACGACT GGTACCTGGC GGCTGCAGGG TACAACGCGG GTGAGAACAA GATCCTGCGC
GCCATCAACA TGTACAACAC CCGCGACTTC TGGGAGATCT CCAAGGGGAG CTACCTGGCC
CGCGAGACCA AGGATTACGT CCCGAAACTT CTGGCTGCAG CCATCATCGC CAAGGAACCG
GCCAAGCACG GCTTCGCAGA CGTGGCCTAC CTCCCCCCCA TCGAATTCGA CGTGGTGAAG
ATCCCGTCGC GCACGGACCT GGAGGTGGTA GCCAAGGCTT GCGGGGTCTC GGTGCAGACC
ATCCGCGACT TGAACCCTGC GCTGCGCCGC GGCTCCACTC CGCCGGACTA CCCGGGGTAC
CAGCTGAAGG TTCCCCGAGG GGCGGCAGCC TCCTTCGAGA CCGAGTACGC CAAGGTGCCC
GAGTCCGAGC GCTACACCGA GAAGGTGAAG CACGTGCGCT ACCGCGCCAA GAAGAAGGAC
ACCCTCGTCT CCATCGCCAG ACGCTTCAAG ACCACGCCGC AGGCTATTGC CGAGCTGAAC
GACCTGGGGC ACAAGAAGGC CGCGAAGCTC CACGGCAAGG TGCTGACCGT CCCGGTGCTG
GTAGCGGCTC AGGGCGAGCA GACATCGACT CCGGCCCTGG CTGAGGCGAA GGCGGAGGCC
AAGGAGTTCC ACAAGTACTA CACCGTGAAG AAGGGCGATA CCCTTGCCTC CCTGGCCAAA
AGGTTCAACG TCACGGCGCG GGTTCTCTCG GCCTGGAACA ACCTGAAGAC CAGGGTGGCG
CTGAAACCCG GCAAGCGCAT CATCGTCGCC AAGTACCAGG AGAAGAAGGG CGCCGGGGCA
CGGGACTCGG GATAG
|
|---|
| Protein sequence | MIKTTLIILS LLFSTTAFAA PASTAAEQRD LARAMQVASN SSDVALSKGL GLTPSDFSDD
EDFSDDSQDY DLKLPEMELP DSDIPLTFNT KVDYFVRYFQ GPARPVFAKW LSRSERYIPM
MKTVLKKEGL PEDLVYLAMI ESGFMTHAVS VASAVGPWQF MPATGKRYAL RIDPWVDERR
DPLKATIAAA LYLKELYALF NNDWYLAAAG YNAGENKILR AINMYNTRDF WEISKGSYLA
RETKDYVPKL LAAAIIAKEP AKHGFADVAY LPPIEFDVVK IPSRTDLEVV AKACGVSVQT
IRDLNPALRR GSTPPDYPGY QLKVPRGAAA SFETEYAKVP ESERYTEKVK HVRYRAKKKD
TLVSIARRFK TTPQAIAELN DLGHKKAAKL HGKVLTVPVL VAAQGEQTST PALAEAKAEA
KEFHKYYTVK KGDTLASLAK RFNVTARVLS AWNNLKTRVA LKPGKRIIVA KYQEKKGAGA
RDSG
|
|---|
| |