Gene Gbem_0379 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagGbem_0379 
Symbol 
ID6783204 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameGeobacter bemidjiensis Bem 
KingdomBacteria 
Replicon accessionNC_011146 
Strand
Start bp454465 
End bp456408 
Gene Length1944 bp 
Protein Length647 aa 
Translation table11 
GC content60% 
IMG OID642766346 
ProductPAS/PAC sensor hybrid histidine kinase 
Protein accessionYP_002137204 
Protein GI197116777 
COG category[T] Signal transduction mechanisms
[K] Transcription 
COG ID[COG0642] Signal transduction histidine kinase
[COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 
TIGRFAM ID[TIGR00229] PAS domain S-box 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGACGAAA GCCGCGACAA CCATAGCTTC GCCTTTTTGG AGCAGAAGGT CGAGGAGCGA 
ACCCGCGAGT TGAAACAGGA GATCCAGGAG CGCCTGCGCG CCGAAGGGCA ACTGGCCGAG
GCGCGGGACC ACTACCTGAA CATCCTGGCC GAGGCCCCCG CTCTGATCTG GCGTGCCGAC
ACGCAGGCCA AGTGCGACTG GTTCAACCAC ACCTGGCTTT CTTTCACCGG CCGCACCATG
GAAGAGGAAT ACGGCGACGG CTGGGCACAG GGGGTCCACC CCGACGACCT GGAGCGCTGC
GTTGCCATCT GGCTTGGGGC GTTTCACCAG AAGGCCCCGT TCGAAATGGA GTACCGGCTG
CGACGCCACG ACGGCGTATT CCGCTGGATC CTGGACATCG GCCGGCCCTT CTCCGGGCTC
GACGGCAGCT TCGCCGGGTA TATCGGTTAC TGCTTCGACA TCACCGACCG CAAGGGTGCG
GAGATGGAGC TGGTATTGGC AAGAGAAGCC GCCGAGGCTG CCAGTAAAGC GAAGACCGAG
TTCCTGGCCA ACATGAGCCA CGAGATCCGC ACCCCGATGA ACAGCATCAT CGGGATGACG
CAGCTTCTGG CCTACACTGA GCTTTCAGCC GAGCAGAAGG AGTACGTCGA GGGAATCCTC
ACCTCTTCGG AGGGTCTCCT TGCTATCATC AACGACATCC TCGATCTTTC GAAAGTGGAG
GCGGGGAAGA TCGAACTGGA GTCGCGGAAT TTCAGCCTCA GGCAGAGCAT CAACGAAATC
ATCAGGACCC AGACGGCGGC GGCCCACGAA AAGGGGCTCC AGCTGAAAGT CAGTATCCCT
GAAGAGATCC CCGATGCGGT GGTCGGCGAC CGGCTAAGGC TAAAGCAGGT GCTACTCAAC
ATCATCGGCA ACGCGATCAA GTTCACCGCA AGCGGGAGCA TTGCGGTAAC GGTAGCGCTG
GCGGAAAAAA AAGAGGAAGC GGCCCGCATC ACATTCAGCG TCACCGATAC CGGCATCGGG
ATAGCGCCGG AGTCCCTGGA CCGCATCTTC GCCCCGTTCG CGCAGGAAGA CACCTCCACC
ACCCGGAGGT ACGGCGGCAC CGGTCTTGGG CTTTCCATCA GCACGAAGCT GGTCCGGCTC
ATGGGGGGAC GGATCTGGGC GGAAAGCCGC AAGAACGCCG GCAGCACCTT CCACTTTGAG
ATCCCCTTCC GGCTCTGCGC CAAAAAGGCC CGCCCCAAGG CGTCCCTCAA TACCGCCAAG
AAAGCCGTCT GGGACGGGGC CAAGCTCCGC ATCCTGCTGG CCGACGACCA GGAGATGAAC
CGCAACATTA TGGAGAAACT CCTGGGGCGA CTGGGGCACG ATCTGGAAAG TGCGGCGGAT
GGCGGCGAGG CGCTAGGAAA ATGGGAAAAG GGGAACTTCG ACCTCATCCT CATGGATGTC
GAGATGCCCG GTATCGACGG CACGGAAGCG ACCCGCGTGA TCCGAGAGAC CGAGACCCCG
CTGGGAAAGC GGACCCCCAT CATCGCCCTC ACCGCCCATG CGCTTAAGAG CCACCAGGAG
ATGCTTCTCG GACTAGGCTA CGACGGGTAC GTACCCAAGC CTGTGGAGAT TCCCACGCTG
TTGCAGGAGA TGAAGCGCTG TCTGCACCTG CCCGACCTTG ACACAGCAGG CAACGGCGAC
GCCGCCGACG GAGTTCCCAT GACTCCCGCG GCAAACCAGC TTGGCACAGT GGACAGGCAG
CAGCTTGCGG ATATACTCAC TGCAGTCAGC TCACTGTTGC GTCAAAGAAA CATGAAGGTC
ATAGACAAGG TAAATGACCT CTCCGCACTG ATTCCCGGTT CACCTCTTCT AGAACAGCTG
AACCAGCAGA TACGGCAATT CGATTGCCAA AGCGCTCTTA ATACAGTCGG ACAAATCCTC
CTGAATTACG ACATCCACTC CTGA
 
Protein sequence
MDESRDNHSF AFLEQKVEER TRELKQEIQE RLRAEGQLAE ARDHYLNILA EAPALIWRAD 
TQAKCDWFNH TWLSFTGRTM EEEYGDGWAQ GVHPDDLERC VAIWLGAFHQ KAPFEMEYRL
RRHDGVFRWI LDIGRPFSGL DGSFAGYIGY CFDITDRKGA EMELVLAREA AEAASKAKTE
FLANMSHEIR TPMNSIIGMT QLLAYTELSA EQKEYVEGIL TSSEGLLAII NDILDLSKVE
AGKIELESRN FSLRQSINEI IRTQTAAAHE KGLQLKVSIP EEIPDAVVGD RLRLKQVLLN
IIGNAIKFTA SGSIAVTVAL AEKKEEAARI TFSVTDTGIG IAPESLDRIF APFAQEDTST
TRRYGGTGLG LSISTKLVRL MGGRIWAESR KNAGSTFHFE IPFRLCAKKA RPKASLNTAK
KAVWDGAKLR ILLADDQEMN RNIMEKLLGR LGHDLESAAD GGEALGKWEK GNFDLILMDV
EMPGIDGTEA TRVIRETETP LGKRTPIIAL TAHALKSHQE MLLGLGYDGY VPKPVEIPTL
LQEMKRCLHL PDLDTAGNGD AADGVPMTPA ANQLGTVDRQ QLADILTAVS SLLRQRNMKV
IDKVNDLSAL IPGSPLLEQL NQQIRQFDCQ SALNTVGQIL LNYDIHS