| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Gbem_0214 |
|---|
| Symbol | |
|---|
| ID | 6783038 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Geobacter bemidjiensis Bem |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011146 |
|---|
| Strand | + |
|---|
| Start bp | 251924 |
|---|
| End bp | 255397 |
|---|
| Gene Length | 3474 bp |
|---|
| Protein Length | 1157 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 642766181 |
|---|
| Product | transcription-repair coupling factor |
|---|
| Protein accession | YP_002137041 |
|---|
| Protein GI | 197116614 |
|---|
| COG category | [K] Transcription
[L] Replication, recombination and repair |
|---|
| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
|---|
| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.0683043 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACCATAC CCGTACCCGA ATACCTGAAG AGCATTAAGG AAAAACTCGC CCCCGAAAAG
AGCCGGTTGA GCCTCGCGGG GGTGGACGGC TCCGCCCCTG CTTATCTCTT GTCGCGGCTC
ATGACCGAGT CCGGCCCCCC CTTGGTGGTT ATCACCTCTG ACCAGGAGAG CGCAGACGAG
CTTGCCCGCG AGCTCCGCTT TTTCAGCTGC AGCCACAACG CGGTACTCCC CTTCCCCGGC
TGGGACGTCA CCCCCTTCGA GGCAGCGAGC CCCCACCCGG ACCTCGTGGG GGAGCGGCTG
AACGCTCTTT TGCGCCTTAT GGACGGCGGC GCCCGGGCCG TCGTGGTGCC GCTTGCCGCC
GCGCTGCAGC GGGTGATTCC GCGCGAGACT TTGGGGGGCG TCTGCCAGTA CCTTGTGGCC
GGCGAGGAAC TCGAGCGCGA GACCCTGGTC GAGAAGCTGG TGAAGCTAGG CTACTCCCAC
GTCCCCATCG TCGAGGACCG CGGCAGCTTC TCGGTGCGCG GGGGGATCCT GGACATATTC
CCCCCCGACC AGGAGAGGCC GGTGCGCATC GAATTCTTCG GCGACCTGGT CGAGACCATG
CGCCTTTTCG ACCCGGCCAC CCAGCGCTCG CTGGAGCCTC TTGACGAACT GGTGCTGCTC
CCCTCCCGCG AGGTGATCCT GTCGGAGGGG GTGGTCAAGG AGTTCACGCC GAGATTGAAG
CGGCGCTGCG ACCACTTGGG GATCGGGGCC GACCGGCGCC GCGAGCTTTT GGAGCAGTTG
CAGCACGCCA TCTATCCCCC CGGTGTGGAT TTCCTGCAGC CGCTTTTCCA CCCGGGGCTG
GAGACGCTCT TCGACTACGC AGGCCCCGGC GCTACCCGCG TCCTCGTCGA CCCGGCCGCC
ATAGCGGAGG CGTGCGAGCG CTTCGAAGCG GATCTCGCCA AGGCGGCGGC CCGCGCCGAG
CTGCGCGACG CCATCACCTG CGACCCCGCC GACCTCTACC TCGCCCCCGA AGAGTTTCAC
GACACGCTGA ACGCCGGGCG CCGCCTGGAG TTCCCCCGCC TGGAGCTAGC CGGCGAAGGG
GGGGAGACCC TCCGCCTCAG ATGTGTCGCC AACAGCGACC TGAAGCTAGG GGTGAGCCCT
GAGGGGGATC GGGTCCTGGC ACCCTTGACC GAGAAGATGG TGACCTGGAT CGCGGCGGGA
AACCGCGTGC TGGTCCCGTG CCACCAGGCG GGACAGGCCA GAAGGCTCTA CGAGCTCCTT
TCGCATTACC GCCTCCCGCT CGACTCCACC CAGGACTGCT TCGCGGACGT GGCCGCGCGT
CCCCCCGGCC GTGTCGAGAT CCTGACCGGG GAGATCTCCC GCGGTTTCAG GCTTGAGGAA
GAGCGCCTGG TCGTGGTCGC CGAGGAGGAG ATCTTCGGCA AGAGGGTGAA GCGGCGCGGG
CTCTCCGAGG TGAAGAAGCA GCAGCTGCTT ACCTCGCTTG CGGAGCTTAA GCCGGGCGAC
CACATGGTGC ACGTCGACTT CGGGGTAGCC ATCTACCGCG GGCTCCAGCA CCTGAGCCTC
ACCGGGCTGG AGGGGGACTT CCTGCTCCTG GAGTACGCCG GCGGCGACAA GCTCTACCTC
CCGGTGGACC GCATCAACCT GGTGCAGCGC TACGTGGGAG CCGAGGGGAT CGAGCCGAGG
CTCGACCGTC TCGGCGCGGC GGGTTGGGAA AAGGCCAAGG CGAAGGCCAG GGCCGAGGTG
CAGGAGATGG CGGCAGAACT CCTGAAGATC CACGCCGCGC GCGAGGTGCA GCAGGGTTTC
AAGTTCTCCC CCGCCGACGA CATGTACCGC GCCTTCGAGG CCTCCTTCGC CTTCGAGGAG
ACCCCGGACC AGGCCCAGGC CATAGACCAG GTGATCGCGG ACATGGAAAG CCCGCGCCCC
ATGGACCGGC TGGTCTGCGG CGACGTCGGC TACGGCAAGA CCGAGGTGGC CATGCGCGCC
GCCTTCAAAT CGACCTTGGA CGGGAAACAA GTGGCGATCC TGGTCCCCAC CACGGTCCTC
GCCCAGCAGC ACGCCGAGAG TTTCGCCTCG CGCCTCAAGG ATTACCCGGT CCGGGTGGAG
ATGCTCTCGC GCTTCAGGAC CCCCCAGCAG CAAAAGCAGA TCCTGGAGGG GGTGAAGAAA
GGGGAGGTCG ACATCGTCAT CGGCACCCAC AGGCTTTTGC AAAAGGACGT GGTCTTCAAG
GACCTGGGAC TTTTGATCGT CGACGAGGAG CAGCGCTTCG GCGTGGCCCA CAAGGAAAGG
CTCAAGCAGT TCCGCGCCGT GGTCGACATA CTCACCCTCA CCGCTACCCC GATTCCGCGC
ACCCTCTACA TGTCACTTAT GGGGATACGC GACCTCTCCA TCATCGATAC GCCGCCGGTG
GACCGGCTCG CCATCAAGAC CTTCGTCTCC CGCTCCTCGG ACGAGCTGAT CCGGGAGGCG
GTGCTCAGGG AGCTTAGGCG CGGCGGGCAG GTGTTCTTCG TCCACAACCG GGTGCAGACG
ATAGGGGCCA TGGCCGAGGA ACTGAAGCGG ATAGTCCCCG AAGCGAAGAT CGCGGTGGGG
CACGGCCAGA TGGCCGAGAA GGAGCTGGAG CAGGTGATGC TCTCGTTCAT GCATGGCGAG
ACCAACCTCC TTCTTTGCAC CACCATCATC GAAAGCGGCC TCGACATCCC GACCGCCAAC
ACCCTGATCG TGAACCGGGC CGACACCTTC GGGCTGTCGC AGCTCTACCA GTTGCGCGGC
AGGGTGGGGC GCTCCAAAAG CCGCGCCTAC GCCTATCTCC TCATCCCCGG CGAGGGGGCC
ATTTCGCCTG AGGCCCGGGA GCGGTTGAAG ATCCTGCAGG AGTTGACCGA GCTGGGGGCG
GGGTTCAGGA TCGCCACCCA CGACCTGGAG CTCAGGGGGG CGGGCGACCT CTTGGGGGCG
CGGCAAAGCG GGGACATCGC GGCGGTGGGA TTCGAACTCT ACACCGAACT TCTGGACGAG
GCGGTGCGCA CCCTGAAGGG TGAGGCCCTG CCGGAGCGGG TCGAGCCGGA GATCAAGCTC
AAGGTTCCCG CCTTCATCCC GGAGGATTAC GTACGGGACC CGAACCAGCG CCTGATGATC
TACAAGAAGC TGACTCAGCC GACCGACGAG GCCGAGATAG ACGATATCCG GGCGGAACTC
GCCGACCGCT TCGGCCAGCT CCCCATGGCA GCTGTCTACC TGTTGGAGGT GATGCGCCTG
CGGGTGACGC TGAAGCGGCT CCTGGTGAAG GAGATCGAGC TGGCCGGCAA CGAGCTGGTC
CTCTCCTTCC ACGAGCGGAC CCCCGTCTCG CCCGACGCCA TCATGGCTTT GCTCAGGAAG
GAGAAGGGGA AATACCGGTT CACGCCGGAC TTCCGCCTAT ACGCGCGCCT GGCCGACGGC
TCCTTCGAGG GGGTCCTTTC CGAGGCCAGA AATCTCTTGA AATGCCTAGG CTGA
|
|---|
| Protein sequence | MTIPVPEYLK SIKEKLAPEK SRLSLAGVDG SAPAYLLSRL MTESGPPLVV ITSDQESADE
LARELRFFSC SHNAVLPFPG WDVTPFEAAS PHPDLVGERL NALLRLMDGG ARAVVVPLAA
ALQRVIPRET LGGVCQYLVA GEELERETLV EKLVKLGYSH VPIVEDRGSF SVRGGILDIF
PPDQERPVRI EFFGDLVETM RLFDPATQRS LEPLDELVLL PSREVILSEG VVKEFTPRLK
RRCDHLGIGA DRRRELLEQL QHAIYPPGVD FLQPLFHPGL ETLFDYAGPG ATRVLVDPAA
IAEACERFEA DLAKAAARAE LRDAITCDPA DLYLAPEEFH DTLNAGRRLE FPRLELAGEG
GETLRLRCVA NSDLKLGVSP EGDRVLAPLT EKMVTWIAAG NRVLVPCHQA GQARRLYELL
SHYRLPLDST QDCFADVAAR PPGRVEILTG EISRGFRLEE ERLVVVAEEE IFGKRVKRRG
LSEVKKQQLL TSLAELKPGD HMVHVDFGVA IYRGLQHLSL TGLEGDFLLL EYAGGDKLYL
PVDRINLVQR YVGAEGIEPR LDRLGAAGWE KAKAKARAEV QEMAAELLKI HAAREVQQGF
KFSPADDMYR AFEASFAFEE TPDQAQAIDQ VIADMESPRP MDRLVCGDVG YGKTEVAMRA
AFKSTLDGKQ VAILVPTTVL AQQHAESFAS RLKDYPVRVE MLSRFRTPQQ QKQILEGVKK
GEVDIVIGTH RLLQKDVVFK DLGLLIVDEE QRFGVAHKER LKQFRAVVDI LTLTATPIPR
TLYMSLMGIR DLSIIDTPPV DRLAIKTFVS RSSDELIREA VLRELRRGGQ VFFVHNRVQT
IGAMAEELKR IVPEAKIAVG HGQMAEKELE QVMLSFMHGE TNLLLCTTII ESGLDIPTAN
TLIVNRADTF GLSQLYQLRG RVGRSKSRAY AYLLIPGEGA ISPEARERLK ILQELTELGA
GFRIATHDLE LRGAGDLLGA RQSGDIAAVG FELYTELLDE AVRTLKGEAL PERVEPEIKL
KVPAFIPEDY VRDPNQRLMI YKKLTQPTDE AEIDDIRAEL ADRFGQLPMA AVYLLEVMRL
RVTLKRLLVK EIELAGNELV LSFHERTPVS PDAIMALLRK EKGKYRFTPD FRLYARLADG
SFEGVLSEAR NLLKCLG
|
|---|
| |