| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Gbem_0128 |
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| Symbol | |
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| ID | 6782950 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Geobacter bemidjiensis Bem |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011146 |
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| Strand | - |
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| Start bp | 152612 |
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| End bp | 155227 |
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| Gene Length | 2616 bp |
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| Protein Length | 871 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 642766094 |
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| Product | DNA ligase D |
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| Protein accession | YP_002136955 |
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| Protein GI | 197116528 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1793] ATP-dependent DNA ligase
[COG3285] Predicted eukaryotic-type DNA primase |
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| TIGRFAM ID | [TIGR02776] DNA ligase D
[TIGR02777] DNA ligase D, 3'-phosphoesterase domain
[TIGR02778] DNA polymerase LigD, polymerase domain
[TIGR02779] DNA polymerase LigD, ligase domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGGACTGG AAGAGTATCA GCGCAAAAGG AATCCGGGGA GGACGCCGGA GCCGCCGGCC
AGCGAGGGGA AGTCGGAGAG ATCTTTACGG TTCGTGGTGC ATAAGCACGC GGCCTCTCAT
CTGCATTACG ACTTTAGGCT CGAGCTCGAC GGAGTTCTGA AAAGCTGGGC CATCCCCAAG
GGCCCCTCGC TGGATCCCTC GGTAAAAAGG CTCGCCATGA TGGTGGAGGA CCACCCCTAC
GACTACGGCG ACTTCGAGGG GGTGATTCCC AAGGGGAATT ACGGGGCAGG CGAGGTGATC
GTCTGGGACA CCGGGAGCTA TGAGGCCCCG GGGGCGGCCG ATCCGGAACA GGGCGTGAGG
CTGCTGCGCG AGGGGCTGAA AAAGGGAGAC CTGAAATTCA TCCTCGTCGG CCGGAAATTG
AACGGGGAAT ATGCCCTAGT TCGCATCAAG GGGGACAAGG AGAACACCTG GCTTTTGATC
AAGAAAAACG ACCGGTTCGC CTCGACCGAG GACGTGACGT TGCAGGACCG TTCGGTGGTC
AGTGACGTCA CCATCGAGGA GCTAAAGACG GGGAGGAAGC CACAGGCGTT GCCCCTAGCC
GCCGCAGAGG CGGCGGAACC AGTCGGACCT GTCAGACCTG CCGCTCCGAT GCCGCACCGA
CTCACTCCGA TGCTGGCCAA CTCCGCGGCC GAGCCCTTCG ACGATCCCGA CTGGCTCTTC
GAGATAAAAC TCGACGGCTA CCGCGCCATC GCCGAGATAG AGGGCGGCGA GGTGCAGCTC
TACTCGCGCA ACAACCTCTC CTTCAACAAG CGCTTCCCCG CCATCGTCCA GTCACTTGCT
TCCCTGCCGG TCACGGCAGT GCTGGACGGT GAGGTGGTAG CCCTCGACGC CAAGGGGAGG
TCTTCCTTCC AGCTCTTGCA GAACAGCCTG CGCACCGGGG AGAAGAACAT CTACTACTAC
GCCTTCGACC TCCTCTACCT CGACGGCGAG GACCTGCGCG CCGAACCGCT CCAGGCACGC
AAGGAGAGGC TTCGCAACCT GCTCCCCGAA CTCCCCTGGG TCCGCTTCAG CGACCATATC
AGGGAGTACG GCAGGCAGTT CTTCGAGCTT GCCCGCGAGA ACAACCTGGA GGGAATCCTC
GCCAAAAGGG CCGACAGCCG GTATTTTGCG GGAAGAAGAA GCGGCGACTG GCTGAAGATT
AAGATACGGC TGCAGCAGGA GGCGGTGATC TGCGGGTTCA CCCAGCCCCG AGGGAGCAGG
AAAGGATTGG GCTCTCTCGT GCTGGGGGTC TACGAAAATG GCGAGCTGGT CTACATCGGG
CTTACCGGAG GGGGGTTCGA CGATGTGGGG TTGAAGGAGA TGTACGCTGC GCTGCAACCG
CTGATCCAGC CGGAGTCCCC TTTCCGGCAG CAGGTGAAGA CCAGCATGCC GGTTACCTGG
ACCAAACCAG TGCTGGTCTG CGAGGTCGAA TTCGCCGAGT GGACCGACGA GAACGTCATG
CGCCTGCCCA TTTTCCTGGG GCTTCGTGAG GACAAGGACC CCAGGTCCGT GCAGCGGGAG
ATCTTTCCCG CGGAGGTCCA GCCCCCGGTG CACCATGCGC AGACGGATCA AGAGGAGGAT
GTTGGCGAGC CTGCGGCAGG GGAAAAGGTG CCTGCAGAGG AGACGGTTGC CACAGCCAAG
CCTTTCGTGA AGAAGGGGGG CGCGAAGAAA GGGGAGGTAA ACCTCGTCAT CGACGGGCAG
CGGCTCACCC TGACCAACCT GGACAAGGTC TTCTGGCCGG AGGAGGGATA TACCAAGGGG
GACGTCATCG ACTACTACCG CAAGATGGCA CGGGTGATAC TCCCGTACCT CATGGACCGC
CCGGAGTCGA TGTACCGTAC GCCGCACGGC ATCGCCGAAG GAGGTTTCTA CCAGAAGGAG
ACGGCCGACC TGATCCCCCC CTGGATCACC GCCCGGGAGA TCTATTCCAA ACACGTCGAC
AAGAACATCA AGTTCCTCGT CTGCCAGGAC GAGGCGACGC TCATCTACAT GGCCAACCTG
GGCTGCATCG AGATCAACCC ATGGCTGTCG CGGCTGCAGC AGCTCGACTA CCCCGATTAC
CTGGTGATCG ACCTGGACCC CGAGGACATC TCCTTCGAGA AGGTGATCGA GACCGCGCTC
GCCGTGCACG AAGTCCTGGA AAGCGCGGGC GCGGCCAGTT TCCCGAAGAC CTCCGGCGCC
ACCGGCATCC ACATCTACGT CCCGCTGGGA GCACGCTACG ACTACGACAC GGCAGGGGTA
TTCGCGAAGC TGGTGGCGAC CCTCGCGCAC CACAAGGTCC CCGGCTTCAC CAGCCTCTTG
CGCAGCCCCA GGCAGCGCCA GAAAAAGGTG TACCTCGACT TCCTGCAGAA CAAGCCGGGC
CAGACCCTCG CCGCCCCCTA CAGCATCCGC CCCCGCCCCG GGGCGACCGT TTCGGCGCCG
CTTCGCTGGG AGGAAGTGAA GCCGGGTCTC GACCCGCGCC AGTTCACCAT CAACACCATC
GGGAAGCGGC TGGAGCAGGT CGGCGACCTG TTCCAAGGCG TCCTCGGTCC CGGTATCGAC
ATGGAGCGCT GCCTGGAGCG GCTGCAAAAC GGGTAG
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| Protein sequence | MGLEEYQRKR NPGRTPEPPA SEGKSERSLR FVVHKHAASH LHYDFRLELD GVLKSWAIPK
GPSLDPSVKR LAMMVEDHPY DYGDFEGVIP KGNYGAGEVI VWDTGSYEAP GAADPEQGVR
LLREGLKKGD LKFILVGRKL NGEYALVRIK GDKENTWLLI KKNDRFASTE DVTLQDRSVV
SDVTIEELKT GRKPQALPLA AAEAAEPVGP VRPAAPMPHR LTPMLANSAA EPFDDPDWLF
EIKLDGYRAI AEIEGGEVQL YSRNNLSFNK RFPAIVQSLA SLPVTAVLDG EVVALDAKGR
SSFQLLQNSL RTGEKNIYYY AFDLLYLDGE DLRAEPLQAR KERLRNLLPE LPWVRFSDHI
REYGRQFFEL ARENNLEGIL AKRADSRYFA GRRSGDWLKI KIRLQQEAVI CGFTQPRGSR
KGLGSLVLGV YENGELVYIG LTGGGFDDVG LKEMYAALQP LIQPESPFRQ QVKTSMPVTW
TKPVLVCEVE FAEWTDENVM RLPIFLGLRE DKDPRSVQRE IFPAEVQPPV HHAQTDQEED
VGEPAAGEKV PAEETVATAK PFVKKGGAKK GEVNLVIDGQ RLTLTNLDKV FWPEEGYTKG
DVIDYYRKMA RVILPYLMDR PESMYRTPHG IAEGGFYQKE TADLIPPWIT AREIYSKHVD
KNIKFLVCQD EATLIYMANL GCIEINPWLS RLQQLDYPDY LVIDLDPEDI SFEKVIETAL
AVHEVLESAG AASFPKTSGA TGIHIYVPLG ARYDYDTAGV FAKLVATLAH HKVPGFTSLL
RSPRQRQKKV YLDFLQNKPG QTLAAPYSIR PRPGATVSAP LRWEEVKPGL DPRQFTINTI
GKRLEQVGDL FQGVLGPGID MERCLERLQN G
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