| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | MADE_04000 |
|---|
| Symbol | |
|---|
| ID | 6777429 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Alteromonas macleodii 'Deep ecotype' |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011138 |
|---|
| Strand | - |
|---|
| Start bp | 4308268 |
|---|
| End bp | 4309542 |
|---|
| Gene Length | 1275 bp |
|---|
| Protein Length | 424 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 642757451 |
|---|
| Product | Na(+) driven multidrug efflux pump |
|---|
| Protein accession | YP_002128284 |
|---|
| Protein GI | 196158795 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG0534] Na+-driven multidrug efflux pump |
|---|
| TIGRFAM ID | [TIGR00797] putative efflux protein, MATE family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATCTTAG CGAATATTAC TACACCGCTA TTAGGCTTAG TGGATACTGC GGTTCTCGGG
CACATGTCGT TACCCGCCAT GCTTGCGGGG GCGTCGGTAG GTGCGCTCAT ATTAACCCAA
ATATACTGGG TATGTGGGTT TCTTCGCATG TCTTCAACGG GGTTAAGTGC CCAAGCTAAA
GGCGCGCAGA ACAATACATT AGAGTCGGCG AAAGTATTAT GGCAAACGGT GGCCGTAGCC
TTGTTGTTGG GGGGCGCCGT GCTTGTTCTT CAGTCCCCTA TTCTTTCTGT AGGCTTAACC
TTAACCCAGC CAAACAGTGA CGTAGCCCTT CACCTTCAAC ATTACTTTTC GACCCGAGTG
TGGGGGGCAC CTGCTGCCAT GCTGAATCTT GCATTGGTGG GGTGGTTAGT GGGGCAACAG
AAAACGCGCA GCGTTATGAC CATTCAAATT GTGGGGAATT TATTAAATGC CACGCTCGAT
GTGATATTTG TGTTTGGCCT GAACCTGTCT GTGGCTGGCG TAGCGCTAGC CAGCGTAATC
GCTGAATATA CCATGGCAAT AATGGCGCTA GTGGTGGCTT TTAAACAGGT TGGCGGTGTA
GCGGTAAGTG CATCGTGGTT TAACCGCGCT GCCCGAAAAG TGTTGATGAA GCTAAACGGT
GACATGCTAT TACGCAACTT AGCATTGCAA GGCTGCTTAG CGTTCCTCAC TATTCAAGGC
GCCCGCTACG GCGAAACGTC GGCAGCGGTC AACGCTATAC TTATGCAGTT CTTCGTTTTG
ATTGCTCTGG GGTTAGATGG CATTGCCTAT GGTGTGGAAG CGCTGGTGGG GGAAGCCAAA
GGGGCTTCAA ATACGGCCGA AATTAAACGG CGTACTTATC AAGGGCTAGT TTGGTCGAGT
ATTTTTGCCC TTATCTATAG CCTGATATTT TACGCAGCAG GTGAAGCCAT TATTGAGCTA
CTTACCGAGC ATGGTGGCAT TGTAAGGGCA GCACTGCCCT ACCTTAGCTT GATGGTTTTA
CTTCCCTTGT TGGCGCACTG GTGCTTTTTA TACGATGGTG TATTTGTTGG CCTTACCCGA
GCCAGCGCAA TGCGAAATAC TATGATAATA AGTGCGCTAG GCGTCTACTT CCCCGTGTGG
TACCTCACCA AAAACCAGGG TAATGTAAGC CTATGGTATG CCCTACTTGC CTTTTTACTA
GCTAGGGGCG TGACATTGGC TTGGAGCTTT TATCGGTTAG ACAAGCGTGA AGAACTGGCG
TCTTCTAACG GGTAG
|
|---|
| Protein sequence | MILANITTPL LGLVDTAVLG HMSLPAMLAG ASVGALILTQ IYWVCGFLRM SSTGLSAQAK
GAQNNTLESA KVLWQTVAVA LLLGGAVLVL QSPILSVGLT LTQPNSDVAL HLQHYFSTRV
WGAPAAMLNL ALVGWLVGQQ KTRSVMTIQI VGNLLNATLD VIFVFGLNLS VAGVALASVI
AEYTMAIMAL VVAFKQVGGV AVSASWFNRA ARKVLMKLNG DMLLRNLALQ GCLAFLTIQG
ARYGETSAAV NAILMQFFVL IALGLDGIAY GVEALVGEAK GASNTAEIKR RTYQGLVWSS
IFALIYSLIF YAAGEAIIEL LTEHGGIVRA ALPYLSLMVL LPLLAHWCFL YDGVFVGLTR
ASAMRNTMII SALGVYFPVW YLTKNQGNVS LWYALLAFLL ARGVTLAWSF YRLDKREELA
SSNG
|
|---|
| |