| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | MADE_03700 |
|---|
| Symbol | |
|---|
| ID | 6777917 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Alteromonas macleodii 'Deep ecotype' |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011138 |
|---|
| Strand | + |
|---|
| Start bp | 3997564 |
|---|
| End bp | 3998280 |
|---|
| Gene Length | 717 bp |
|---|
| Protein Length | 238 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 642757153 |
|---|
| Product | pseudouridylate synthase for 23S rRNA (position 746) and tRNAphe(position 32), dual specificity |
|---|
| Protein accession | YP_002127986 |
|---|
| Protein GI | 196158497 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
|---|
| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCTAACC CGAGCTTTGT TTATAACCCA CCAATGACGC CTTATCTTGA TATTTTGTAT
CAGGATGAGG ATATGGTGGT AGCACACAAA CCCAGCGGGC TATTGAGTGT TCCCGGTAAA
GCACTAGAAC ACCGCGACTC TCTGATTAGC CGTGTTAACA CTGTGTACCC CACTGCTACC
GTGGTACACC GGTTAGATAT GGCCACTTCG GGTATTTTAG TACTGGCACT TAACAAAGAC
AGTCATCGCC ATATCTCTAA GCAGTTCGAG CTTCGGCTAA CCCAAAAACG CTATTTCGCG
CGGGTTCACG GCCATATAGA GGAAGATTCG GGCGAAGTAG ACTTACCCCT TATCTGCGAC
TGGCCTAATA GACCAAAACA AATGGTGGAC TTCGAACGGG GCAAAAAAGC CATTACGCGG
TTTGAAGTCA TTGAGCGTGC CACTGACGAT GCAGCGCGCC GCTATACCTT AGTGGCGTTA
TATCCCATTA CAGGGCGCTC ACACCAACTA CGGGTGCACA TGCTAGCCTT GGGCCACCCA
ATCTTAGGTG ACCGGTTGTA TGCTCATGAC GAGGCGCTTA GTATGGCCCC TCGCCTTCAA
CTTCACGCTG AAAGTTTAAG CTTGACTCAC CCAACATTGG AAAAGTGGTT ACATTTTAAA
ACCCCTATCC CGTTTAGCCA TTATCGCCCA GGCGCCCTTT CTATTGATAG AGACTAG
|
|---|
| Protein sequence | MANPSFVYNP PMTPYLDILY QDEDMVVAHK PSGLLSVPGK ALEHRDSLIS RVNTVYPTAT
VVHRLDMATS GILVLALNKD SHRHISKQFE LRLTQKRYFA RVHGHIEEDS GEVDLPLICD
WPNRPKQMVD FERGKKAITR FEVIERATDD AARRYTLVAL YPITGRSHQL RVHMLALGHP
ILGDRLYAHD EALSMAPRLQ LHAESLSLTH PTLEKWLHFK TPIPFSHYRP GALSIDRD
|
|---|
| |