Gene MADE_03534 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMADE_03534 
Symbol 
ID6777908 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAlteromonas macleodii 'Deep ecotype' 
KingdomBacteria 
Replicon accessionNC_011138 
Strand
Start bp3813450 
End bp3814685 
Gene Length1236 bp 
Protein Length411 aa 
Translation table11 
GC content43% 
IMG OID642756982 
Productdiguanylate phosphodiesterase 
Protein accessionYP_002127820 
Protein GI196158331 
COG category[T] Signal transduction mechanisms 
COG ID[COG3434] Predicted signal transduction protein containing EAL and modified HD-GYP domains 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0852439 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTTCGCGT TTATAGCTCG TCAGCCTATT TTAGATAAAA GCAAAAGTGT CTTTGCCTAC 
GAACTGTTGT TCAGAGATGG TAAAGCTGGC GCTTACCCAG AGCATAATGA AGAAAAAGCA
AAGTACATTT CTGAGCATTT TCACCCTTTG GGTCTTGATG ATATCAGCGG GGAAAAGACA
TCTTTCATTA CGTTTTCCTC TGACACACTT ATATCGCGCT TCCCTACCAC GCTTAACCCA
GAGTCGGTGG TGGTTGAACT TGCCGACCCT ACAGAAAATA CCAGCGGATT ATTTGAAGCT
TGTCAGCACA TTAAACAGCT GGGTTTCAAA CTGGCAATAG ACGACCCCAT GATGGTTGGC
GCGACACACG ATATTTTCCC TCTTATCGAT ATCGTGAAAG TAGATGTAAC CAAAACTCGC
TTTGAAACCA TCGAGAAGCA CATTCCGCGC TATCACGACG CTAACGTACA GCTAGTGGCT
GAACAGGTCG ATACACAAGA CAACTTTTCA ACCTGTGTGG ACTTAGGCTT CGATTTCTTC
CAAGGCTACT TTTTCTCACA ACCCGAGGCA CGCATTTTAA GGCAGCTACC CGCCTCTAAA
ATGAACATCG TTGACTTAAT GGGCGAAAGT TCGAACAACA ACTTTAATAT TGAGCGCATA
AGCCACATTA TTGAACGCGA CGCAACGTTA AGCTTTTTGC TGCTTAAGTT TATTAATAAC
CCCACTATCA ACAAACGTTA CAAGATCACG TCATTAAAGC ACGCGCTAAA TTACATGGGT
GAAGTTGAGA TAAAGAAATT TATCGCTTTG CTGAGTTTAA CCAACTTAGG GGATGATAAA
CCCTTAGAAA TTATCCATAT GTCGTTGGTG CGCGCTAAAT TCTTTGACTT GTTAGCCGAA
CGCAGGGGAA TTAAAAACAA TCCGCCTATT TCGTTTTTAG TAGGTTTGTT TTCCCTGCTT
GAAGGGCTGC TCGACCAATC TATGACCGAT ATTTTAAAGC AACTGCCTCT TTCTGACGAA
GTGAACGACG CATTGCTTGG CAAAAACCTA GAGCTAAATA GCTATATGAC GTTGGTTCGC
GCTTTTGAAA GCGCGCTGTG GATGAACGTT ATTAAGCAGG CCAAAGTGCT TAACATCGAC
CAGAAGCAGC TCCATATGCT TTATAACCAA GCTATTGTTT GGGGTAATGG TGTACGCAGT
GCTATCTCTT CACACTATCC AAGAGCGACG GCATAG
 
Protein sequence
MFAFIARQPI LDKSKSVFAY ELLFRDGKAG AYPEHNEEKA KYISEHFHPL GLDDISGEKT 
SFITFSSDTL ISRFPTTLNP ESVVVELADP TENTSGLFEA CQHIKQLGFK LAIDDPMMVG
ATHDIFPLID IVKVDVTKTR FETIEKHIPR YHDANVQLVA EQVDTQDNFS TCVDLGFDFF
QGYFFSQPEA RILRQLPASK MNIVDLMGES SNNNFNIERI SHIIERDATL SFLLLKFINN
PTINKRYKIT SLKHALNYMG EVEIKKFIAL LSLTNLGDDK PLEIIHMSLV RAKFFDLLAE
RRGIKNNPPI SFLVGLFSLL EGLLDQSMTD ILKQLPLSDE VNDALLGKNL ELNSYMTLVR
AFESALWMNV IKQAKVLNID QKQLHMLYNQ AIVWGNGVRS AISSHYPRAT A