Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | MADE_03534 |
Symbol | |
ID | 6777908 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Alteromonas macleodii 'Deep ecotype' |
Kingdom | Bacteria |
Replicon accession | NC_011138 |
Strand | + |
Start bp | 3813450 |
End bp | 3814685 |
Gene Length | 1236 bp |
Protein Length | 411 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 642756982 |
Product | diguanylate phosphodiesterase |
Protein accession | YP_002127820 |
Protein GI | 196158331 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG3434] Predicted signal transduction protein containing EAL and modified HD-GYP domains |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.0852439 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGTTCGCGT TTATAGCTCG TCAGCCTATT TTAGATAAAA GCAAAAGTGT CTTTGCCTAC GAACTGTTGT TCAGAGATGG TAAAGCTGGC GCTTACCCAG AGCATAATGA AGAAAAAGCA AAGTACATTT CTGAGCATTT TCACCCTTTG GGTCTTGATG ATATCAGCGG GGAAAAGACA TCTTTCATTA CGTTTTCCTC TGACACACTT ATATCGCGCT TCCCTACCAC GCTTAACCCA GAGTCGGTGG TGGTTGAACT TGCCGACCCT ACAGAAAATA CCAGCGGATT ATTTGAAGCT TGTCAGCACA TTAAACAGCT GGGTTTCAAA CTGGCAATAG ACGACCCCAT GATGGTTGGC GCGACACACG ATATTTTCCC TCTTATCGAT ATCGTGAAAG TAGATGTAAC CAAAACTCGC TTTGAAACCA TCGAGAAGCA CATTCCGCGC TATCACGACG CTAACGTACA GCTAGTGGCT GAACAGGTCG ATACACAAGA CAACTTTTCA ACCTGTGTGG ACTTAGGCTT CGATTTCTTC CAAGGCTACT TTTTCTCACA ACCCGAGGCA CGCATTTTAA GGCAGCTACC CGCCTCTAAA ATGAACATCG TTGACTTAAT GGGCGAAAGT TCGAACAACA ACTTTAATAT TGAGCGCATA AGCCACATTA TTGAACGCGA CGCAACGTTA AGCTTTTTGC TGCTTAAGTT TATTAATAAC CCCACTATCA ACAAACGTTA CAAGATCACG TCATTAAAGC ACGCGCTAAA TTACATGGGT GAAGTTGAGA TAAAGAAATT TATCGCTTTG CTGAGTTTAA CCAACTTAGG GGATGATAAA CCCTTAGAAA TTATCCATAT GTCGTTGGTG CGCGCTAAAT TCTTTGACTT GTTAGCCGAA CGCAGGGGAA TTAAAAACAA TCCGCCTATT TCGTTTTTAG TAGGTTTGTT TTCCCTGCTT GAAGGGCTGC TCGACCAATC TATGACCGAT ATTTTAAAGC AACTGCCTCT TTCTGACGAA GTGAACGACG CATTGCTTGG CAAAAACCTA GAGCTAAATA GCTATATGAC GTTGGTTCGC GCTTTTGAAA GCGCGCTGTG GATGAACGTT ATTAAGCAGG CCAAAGTGCT TAACATCGAC CAGAAGCAGC TCCATATGCT TTATAACCAA GCTATTGTTT GGGGTAATGG TGTACGCAGT GCTATCTCTT CACACTATCC AAGAGCGACG GCATAG
|
Protein sequence | MFAFIARQPI LDKSKSVFAY ELLFRDGKAG AYPEHNEEKA KYISEHFHPL GLDDISGEKT SFITFSSDTL ISRFPTTLNP ESVVVELADP TENTSGLFEA CQHIKQLGFK LAIDDPMMVG ATHDIFPLID IVKVDVTKTR FETIEKHIPR YHDANVQLVA EQVDTQDNFS TCVDLGFDFF QGYFFSQPEA RILRQLPASK MNIVDLMGES SNNNFNIERI SHIIERDATL SFLLLKFINN PTINKRYKIT SLKHALNYMG EVEIKKFIAL LSLTNLGDDK PLEIIHMSLV RAKFFDLLAE RRGIKNNPPI SFLVGLFSLL EGLLDQSMTD ILKQLPLSDE VNDALLGKNL ELNSYMTLVR AFESALWMNV IKQAKVLNID QKQLHMLYNQ AIVWGNGVRS AISSHYPRAT A
|
| |