| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | MADE_03532 |
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| Symbol | |
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| ID | 6777882 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Alteromonas macleodii 'Deep ecotype' |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011138 |
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| Strand | - |
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| Start bp | 3810603 |
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| End bp | 3811436 |
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| Gene Length | 834 bp |
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| Protein Length | 277 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 642756980 |
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| Product | RNA polymerase sigma factor |
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| Protein accession | YP_002127818 |
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| Protein GI | 196158329 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02392] alternative sigma factor RpoH
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.0276999 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCCCTGT CAGTGCCACA CAGCGGTAGC ATTGAAGGCT ACATCCAAGC TGTAAGCAGC
ATTGATATGC TTAGCGCTGA GGAAGAGCGC GAGTTGGCAG TGCGCCTTCG CGAAGACGAA
GACTTACAAG CCGCTCGTAA GCTGGTAATG TCACATCTTC GTTTTGTAGT GCACATTGCA
AAATCTTACT CAGGTTATGG CTTACCCCAA GCCGACTTAA TTCAAGAAGG CAATATTGGT
CTGATGAAAG CCGTTAAACG CTTCGACCCA ACAGTGGGCG TACGTTTGGT TTCTTTCGCG
GTACATTGGA TCAAAGCCGA AATTCACGAG TTTGTACTTA AGAACTGGCG AATAGTTAAA
GTTGCGACCA CAAAAGCGCA GCGCAAACTG TTTTTCAACC TGCGTAAGGC CAAAAAACGC
CTGGGTTGGT TCACACACGA CGAAGTACAA ACCGTAGCAA ATGAACTTGG TGTGAGTACA
AAAGAAGTGC TTCAAATGGA AGCTCGTATG AGCAGCCAAG ATCAAGCGTT TGATCTAAGT
GCGGATGAAG ATGAAACGGG CAACTTTGCG CCTGTTCAAT TTCTTGAAGA TAAATCTTCA
GACGTTGAAA CTGACGTAAT TAATAATGAC TGGGATACAG CGGCGAGTAA GCGTTTGTAC
TCAGCGATTA AAACGTTAGA TGATCGCAGC CAAGACATTA TCGAGACGCG TTGGTTAGCA
GATAATAAAA TCACGCTACA AGACTTGGCT GATAAGTATC AGGTGTCTGC AGAACGTGTT
CGTCAAATCG AAAAGAACGC GATGAAAAAA CTTCAAGCAG CTATGGTCGC ATAG
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| Protein sequence | MALSVPHSGS IEGYIQAVSS IDMLSAEEER ELAVRLREDE DLQAARKLVM SHLRFVVHIA
KSYSGYGLPQ ADLIQEGNIG LMKAVKRFDP TVGVRLVSFA VHWIKAEIHE FVLKNWRIVK
VATTKAQRKL FFNLRKAKKR LGWFTHDEVQ TVANELGVST KEVLQMEARM SSQDQAFDLS
ADEDETGNFA PVQFLEDKSS DVETDVINND WDTAASKRLY SAIKTLDDRS QDIIETRWLA
DNKITLQDLA DKYQVSAERV RQIEKNAMKK LQAAMVA
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