| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | MADE_03463 |
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| Symbol | |
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| ID | 6776964 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Alteromonas macleodii 'Deep ecotype' |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011138 |
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| Strand | - |
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| Start bp | 3735154 |
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| End bp | 3737571 |
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| Gene Length | 2418 bp |
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| Protein Length | 805 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 642756911 |
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| Product | ribonuclease R |
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| Protein accession | YP_002127749 |
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| Protein GI | 196158260 |
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| COG category | [K] Transcription |
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| COG ID | [COG0557] Exoribonuclease R |
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| TIGRFAM ID | [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases
[TIGR02063] ribonuclease R |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGTGACG ATCCGCATTA TCAGCGCGAG AAAGAGAAGT ACGACAACCC GGTAGCAAGC
CGCGAATATT TAATGAGTTT ACTAAAAGAA CACGACAAGC CTTTGTCGTT TCTTGATATT
TGTAACTTGG TGAACGCGTT CGACGAAGAA GCCCGAATAG GTATACAGCG CCGCTTACGC
GCCATGGAGC GCGAAGGGCA AGTACAGTTC ACCAAACAGA AAAAATACAT ACTTCAAAAC
CGTGATGAAA TCATAAAAGG CCGCATTATT GGCCACCGAG ATGGTTACGG CTTTCTGCGT
CCTGAAGATA AAAGTGGTGA CTTATTTATC AGTGCTGGGC AAATGAATTT GTTTTTACAC
GATGACGTGG TTGAAGCGCG CATTAGCGGC ACCGACCGTC GCGGTAGAAA AGAAGCCTTT
ATTACCCAAG TTATTGAGCC AAGAAGCGAG CCAATAGTCG GGCGCTATTT CGTAGAGCAA
GGTTTTGGCA TGGTTGTGCC AGATGATAGC CGCCTTCAGC ATGAAATTGT TATTCCACCA
GAAAGTACCA ACGGTGCGCG CATGGGGCAG GTGGTTGTAG TAGAACTCTC CCAACGCCCC
CGCCGTAAAA TGAACCCCGT GGGAAAAATT GTTGAAGTAC TCGGTGAGCA TATGGCGCCA
GGTATGGAAA TAGAAATGGC ACTTCGCACG TTTGACATTC CGCACCAGTG GCCAAATGGC
GTAACCAAAC AAGTGGAAAA GCTTACCGAT CAGGTGCCCG ATGAAGCCAA AGAAGGCCGC
ATCGACTTGC GCCAACTTCC CCTTGTTACC ATTGATGGTG AAGACGCCCG CGACTTCGAT
GACGCAGTAT ATTGTGAACC GCTAGACGAT GGCGGCTGGC AGCTCTGGGT AGCCATTGCG
GATGTAAGCC ATTACGTAAG AACGGGCTCT GCCCTTGATG ATGAAGCGCA ACAGCGCGGA
AACTCAGTGT ATTTCCCCGA CCAAGTTATC CCTATGTTAC CTGAGGTGTT GTCGAATGGA
CTGTGTTCAC TGAACCCTGA AGTCGACCGG CTTTGTATGG TGTGTGAAAT GACGATCAGC
GCCCAAGGGA AGCTAGAAGA GTTTCAGTTC TATGAAGCAG TGATGAACTC TCATGCCCGT
CTTACCTACA ACAAGGTGTG GGGCATATTA CAAGGCGACA AAGAGCTACA TCAGCGTTAC
GAGCCTCATG TCCCACACCT TCGCAATTTG CATGATCTTT ATCGCGCGCT TAAAAAAGCC
CGAGCCAAAC GCGGGGCTAT TGAGTTTGAA ACCCAAGAAG TGAAGTTTGT ATTCAATGCC
CAGCGCAAGA TTGAAAATAT TGTGCCGCTG GTGCGTAACG ACGCGCACAA GCTTATTGAA
GAGTGCATGA TCATGGCAAA CGTGAGTGCG GCTCTTACGC TTGAAAAGCA TGAGGCGCCA
GCGCTATATC GTGTGCACGA CAAACCAGAC GCCGACAGGC TTACCGCTTT TACCAGCTAC
TTAAGTGAAA TTGGTATCCC TCATGCCATT GTAGAAGATG CCGAGCCAGC CGCATTTACC
GACGTGGTGC TTAAAACCCG TGGTCGAGTA GACGAAGAGC TTATTCAAAC CATGCTGCTA
CGCTCGATGA AACAAGCGGT TTACGATGGC GAAAACGTAG GGCACTTTGG CTTGGCGTTA
GAAGCTTACG CGCACTTTAC ATCACCTATC CGTCGTTACC CTGATTTAGT GGTACACCGT
GCATTAAAAG GCATTATTGC TAAACAGCAG GGTAAAAAAG CGGTAAGCGG TGCTAAAAAC
TACACAGTAG AGGAAATTGA GCAGCTTGGT GAACAGTGTT CAATGACAGA ACGCCGCGCT
GATGATGCTA CCCGCGATGT GGCCGACTGG CTCAAGTGCG AGTTTATGTT AGATCACGTA
GGTGACACTT TTGAAGGGGT AGTCAGCTCG GTCACTAATT TCGGTTTATT CATTCGCTTA
ACGGAATACC ATATCGACGG GTTAGTGCAT ATTACGTCAC TCGATGACGA CTATTATCAC
TATGATGATG TGAAACAAGC GTTGGTAGGT GAGTCGGGCC ATCGTCAGTT CAGACTGGGC
GACACAGTCG AGGTAACCGT TGCGGCAGTA AACCTTGATG AAAGAAAGAT TGATTTATTA
CTCGATAAGT CTATGCTGCG CAGCACTAAA GGTAAGAAGG TAAAAGTGAA GACAGTTAAA
AAGTCTTCAG ACAAACCTAC TCGCTTTGAT AATAAACCCC GCTCTGGTAA AGACTCCCGT
TCTGATAAGA AGGGGAGCAA AGGCAAAGGT GGTTCAAATT CGCCCAGTCG TAGCGGTGGA
AAGTCGTCAA GTCGCGGTAG CGCAAAAAGT AGCAACAGCG GCAAAACATT GTCATTGAAT
AAAAGAGGTA AGCGTTAA
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| Protein sequence | MSDDPHYQRE KEKYDNPVAS REYLMSLLKE HDKPLSFLDI CNLVNAFDEE ARIGIQRRLR
AMEREGQVQF TKQKKYILQN RDEIIKGRII GHRDGYGFLR PEDKSGDLFI SAGQMNLFLH
DDVVEARISG TDRRGRKEAF ITQVIEPRSE PIVGRYFVEQ GFGMVVPDDS RLQHEIVIPP
ESTNGARMGQ VVVVELSQRP RRKMNPVGKI VEVLGEHMAP GMEIEMALRT FDIPHQWPNG
VTKQVEKLTD QVPDEAKEGR IDLRQLPLVT IDGEDARDFD DAVYCEPLDD GGWQLWVAIA
DVSHYVRTGS ALDDEAQQRG NSVYFPDQVI PMLPEVLSNG LCSLNPEVDR LCMVCEMTIS
AQGKLEEFQF YEAVMNSHAR LTYNKVWGIL QGDKELHQRY EPHVPHLRNL HDLYRALKKA
RAKRGAIEFE TQEVKFVFNA QRKIENIVPL VRNDAHKLIE ECMIMANVSA ALTLEKHEAP
ALYRVHDKPD ADRLTAFTSY LSEIGIPHAI VEDAEPAAFT DVVLKTRGRV DEELIQTMLL
RSMKQAVYDG ENVGHFGLAL EAYAHFTSPI RRYPDLVVHR ALKGIIAKQQ GKKAVSGAKN
YTVEEIEQLG EQCSMTERRA DDATRDVADW LKCEFMLDHV GDTFEGVVSS VTNFGLFIRL
TEYHIDGLVH ITSLDDDYYH YDDVKQALVG ESGHRQFRLG DTVEVTVAAV NLDERKIDLL
LDKSMLRSTK GKKVKVKTVK KSSDKPTRFD NKPRSGKDSR SDKKGSKGKG GSNSPSRSGG
KSSSRGSAKS SNSGKTLSLN KRGKR
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