| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | MADE_03290 |
|---|
| Symbol | |
|---|
| ID | 6778349 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Alteromonas macleodii 'Deep ecotype' |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011138 |
|---|
| Strand | - |
|---|
| Start bp | 3553293 |
|---|
| End bp | 3554135 |
|---|
| Gene Length | 843 bp |
|---|
| Protein Length | 280 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 642756738 |
|---|
| Product | MscS Mechanosensitive ion channel |
|---|
| Protein accession | YP_002127576 |
|---|
| Protein GI | 196158087 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0668] Small-conductance mechanosensitive channel |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGAAGAGA AACTTTCGCT TTTTTCTGCA AGCGATGTTG AAAGGTACAT AAACGATTAC
GCTATCCCGT GGGGTATTAA CATTGCGATG GCGATTGCGA TTTATGTAAT AGGTAGGATT
GTAGTTGGAT TCCTTCTTTC TATATTTAGA CGTGTGATGT CAAAGTCTAA ATATGACGAC
ATGCTAGTAG ATTTCCTAGA AGCTATTCTA AGCGCTATCT TGATGCTCTT TGTTATTGTG
GCATCACTTG ATCAGCTAGG TGTAGATACC ACATCGTTGG TTGCTATTCT CGGTGCTGCT
GGTTTAGCGA TTGGTCTATC GTTGCAGGAT TCTTTGAAGA ACTTCGCCGC TGGCGTAATG
CTACTGGTAT TTAAGCCGTT TAAAGCGGGC GACTTCGTTG AAGCTGCAGG TACTGCTGGT
TCAATCAAAA AGATTGGCAT TTTCACAACC ACAATGAATA CGCCAGACAA CAAAGAAATT
ATCGTTCCAA ATGGGAATGT CTACAGCGGT AACATCACTA ACTACTCGGC TAAAGATACT
CGCCGTGTAG ATATGGTTGT AGGCATTGGT TACGACGCTG ACTTGCTAAA AGCTAAGCAA
GTGCTGCAAG AAATGATTGC AGCGGACGAT CGAATTCTTG CTGAGCCTGC GCCAACCGTA
GCGGTTTCTG AATTGGCCGA TAGTAGCGTT AACTTTGTCG TACGTCCTTG GGTAAATGCT
GCAGACTTCT GGGCTGTGAA GTTCGACTTT ACAGAACAAG TTAAGCTGCG CTTCGACAAA
GAAGGTATTT CAATTCCATT CCCACAAATG GATGTGCACC TTCACAAAGA AGACAGCGAA
TAA
|
|---|
| Protein sequence | MEEKLSLFSA SDVERYINDY AIPWGINIAM AIAIYVIGRI VVGFLLSIFR RVMSKSKYDD
MLVDFLEAIL SAILMLFVIV ASLDQLGVDT TSLVAILGAA GLAIGLSLQD SLKNFAAGVM
LLVFKPFKAG DFVEAAGTAG SIKKIGIFTT TMNTPDNKEI IVPNGNVYSG NITNYSAKDT
RRVDMVVGIG YDADLLKAKQ VLQEMIAADD RILAEPAPTV AVSELADSSV NFVVRPWVNA
ADFWAVKFDF TEQVKLRFDK EGISIPFPQM DVHLHKEDSE
|
|---|
| |