Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | MADE_03103 |
Symbol | |
ID | 6777604 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Alteromonas macleodii 'Deep ecotype' |
Kingdom | Bacteria |
Replicon accession | NC_011138 |
Strand | - |
Start bp | 3358001 |
End bp | 3358762 |
Gene Length | 762 bp |
Protein Length | 253 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 642756552 |
Product | Response regulator of the LytR/AlgR family protein |
Protein accession | YP_002127391 |
Protein GI | 196157902 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG3279] Response regulator of the LytR/AlgR family |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.00580184 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGATCGCAC TGGTTTTCTT ACAATCTGTT GCTATGCAAA CTTCGCTTTG TACCATGCTT GAAAAGATCG GCCTATTCAG ACATGTTTAC GGCGCGCATT CGGTTGGACA TAGTTTGGCA CTTGCTGAAA AACACCCCCA GTCCATCGGT TTTTATAGCG TGTCGAAGTC TAGCCGAAAT CTCGCTTCAA AGCATTGGCT CGCTGTAGGA GATAAAGACG AAGAAGCCAT GTTGGCATTT AACCATAATG CTTCAGGGTT CATTACGTCT CCGTTTAATG AACAGCAGGT GCGGTGCACT GTTGAACACG TTAAAGCTAA GCACTATTGC CACAAGCGCG ATGTTCAATT TAACCTGTTA GTGAAAGGAT TATGTAAGCA ATATGGCGTA TCTGAATCTG CGCTTTTAGC TACATTGAGG CAGCAGCTCT ATAAAAACGC GCAGCCAAAT GTAGTAGGAA TACGCGCAGA AAACGGATGG TGCTGTTTGA ACCCCGCAGA CATCAAGTGG ATAGAAGCAG CGGGGGATTA CATGTGTGTG CAGACATTAT CGGAAAGTTA CATCGTTCGT ACCACCCTGT GTCATTTGTT AAAGCGGTTA GGCGAACACC ACTTCAAACG CTGTAACCGG TCGGTAGCGG TTAACGCAAA ATACGTAATG CATATAGAAC AAAAATTGAA TCAACAGCGA GTTGTCATGC ACGGTGGCGA AGCGTTTAAA ATAACGCACA AATATTACTA TCAGTACTGG CACACAGGCT AA
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Protein sequence | MIALVFLQSV AMQTSLCTML EKIGLFRHVY GAHSVGHSLA LAEKHPQSIG FYSVSKSSRN LASKHWLAVG DKDEEAMLAF NHNASGFITS PFNEQQVRCT VEHVKAKHYC HKRDVQFNLL VKGLCKQYGV SESALLATLR QQLYKNAQPN VVGIRAENGW CCLNPADIKW IEAAGDYMCV QTLSESYIVR TTLCHLLKRL GEHHFKRCNR SVAVNAKYVM HIEQKLNQQR VVMHGGEAFK ITHKYYYQYW HTG
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