Gene MADE_03103 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMADE_03103 
Symbol 
ID6777604 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAlteromonas macleodii 'Deep ecotype' 
KingdomBacteria 
Replicon accessionNC_011138 
Strand
Start bp3358001 
End bp3358762 
Gene Length762 bp 
Protein Length253 aa 
Translation table11 
GC content45% 
IMG OID642756552 
ProductResponse regulator of the LytR/AlgR family protein 
Protein accessionYP_002127391 
Protein GI196157902 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG3279] Response regulator of the LytR/AlgR family 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00580184 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGATCGCAC TGGTTTTCTT ACAATCTGTT GCTATGCAAA CTTCGCTTTG TACCATGCTT 
GAAAAGATCG GCCTATTCAG ACATGTTTAC GGCGCGCATT CGGTTGGACA TAGTTTGGCA
CTTGCTGAAA AACACCCCCA GTCCATCGGT TTTTATAGCG TGTCGAAGTC TAGCCGAAAT
CTCGCTTCAA AGCATTGGCT CGCTGTAGGA GATAAAGACG AAGAAGCCAT GTTGGCATTT
AACCATAATG CTTCAGGGTT CATTACGTCT CCGTTTAATG AACAGCAGGT GCGGTGCACT
GTTGAACACG TTAAAGCTAA GCACTATTGC CACAAGCGCG ATGTTCAATT TAACCTGTTA
GTGAAAGGAT TATGTAAGCA ATATGGCGTA TCTGAATCTG CGCTTTTAGC TACATTGAGG
CAGCAGCTCT ATAAAAACGC GCAGCCAAAT GTAGTAGGAA TACGCGCAGA AAACGGATGG
TGCTGTTTGA ACCCCGCAGA CATCAAGTGG ATAGAAGCAG CGGGGGATTA CATGTGTGTG
CAGACATTAT CGGAAAGTTA CATCGTTCGT ACCACCCTGT GTCATTTGTT AAAGCGGTTA
GGCGAACACC ACTTCAAACG CTGTAACCGG TCGGTAGCGG TTAACGCAAA ATACGTAATG
CATATAGAAC AAAAATTGAA TCAACAGCGA GTTGTCATGC ACGGTGGCGA AGCGTTTAAA
ATAACGCACA AATATTACTA TCAGTACTGG CACACAGGCT AA
 
Protein sequence
MIALVFLQSV AMQTSLCTML EKIGLFRHVY GAHSVGHSLA LAEKHPQSIG FYSVSKSSRN 
LASKHWLAVG DKDEEAMLAF NHNASGFITS PFNEQQVRCT VEHVKAKHYC HKRDVQFNLL
VKGLCKQYGV SESALLATLR QQLYKNAQPN VVGIRAENGW CCLNPADIKW IEAAGDYMCV
QTLSESYIVR TTLCHLLKRL GEHHFKRCNR SVAVNAKYVM HIEQKLNQQR VVMHGGEAFK
ITHKYYYQYW HTG