Gene MADE_02531 details

Gene Information

• Locus tag: MADE_02531
• ID: 6777026
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Alteromonas macleodii 'Deep ecotype'
• Kingdom: Bacteria
• Replicon accession: NC_011138
• Strand: +
• Start bp: 2751431
• End bp: 2753365
• Gene Length: 1935 bp
• Protein Length: 644 aa
• Translation table: 11
• GC content: 45%
• IMG OID: 642755970
• Product: diguanylate cyclase/phosphodiesterase
• Protein accession: YP_002126821
• Protein GI: 196157332
• COG category: [T] Signal transduction mechanisms
• COG ID: [COG2200] FOG: EAL domain
• TIGRFAM ID: [TIGR00254] diguanylate cyclase (GGDEF) domain

Plasmid Coverage information

• Num covering plasmid clones: 6
• Plasmid unclonability p-value: 0.419727
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAGCTAA CTAATCAAAC TAATTGGGGT ATTGTTGCCC TTTTGTTTTT AGCGTTTACT 
GCATTGTCTG TCGCCGAACT ACGTGAGTTA CAATTAAACA CGTCTGAGGC GGTCACGCTA 
CAGGCTGAAA AAAGCGCGGC AAATTATAGA AAAAACATTG ATCAGCTCTC CTCTCTGTCA 
CCGCAGACAG AGGAGCTAGT CCTTAGCACC CTTCTAGAAA GTACAGTATC GCAGCCCCAT 
ATATCTTACG CCGCAATTGT TGACGCAAGC GGTAGTGTGG TAGCCAAAAG AGAAGCGGCA 
GTTCAGAACG CTGTACCATC GTGGTTCACG TCAATCGATT CCAATTCAGA ATTGGAAAAA 
CGCGTACCTT TAGGTGATAG TCAGCGCGCG CTCGTACTCA CATCAAATAA GGTTGAGGTA 
TACACCAGGT TCACTAACGT ACTACTAAGG AATATTATCG CCTTTGTCGC GCTTTCACTG 
CTTGTTTCAT TGTTGGTTGC AGTAATGAAT CGACGATTTA AGCGACCTAT CGAAGATACC 
GTTAGAAAAC TTAACGACAT GGGGAGCCAT AATTTCACGT CACCCCAAGT GAGTGCCTCT 
TCTGGCGACT GTGAACAGTT GACAAGTACC GTTAATACCC TTTCAAGCAC GCTAGCCTCG 
AAGTTCGATG AACTTACACG CCAGTCTGAG CTATTTAAAA AAGAAGCGAG CAAAGATTCA 
CTAACTAAAC TAGCCAACAG AGGGGCGTTT GAGCGCCACA TGCGTGCGCT ATTAAACGAA 
AACGCAACCT CACAAGAAAA AGAGCTTATT ATTGTACGGC TAGCGCAACT GGCCAGTATT 
AATACCAAGT TAGGTATGGT GCCGGGTGAT AACTATGTTA AAGCGATAGC GAACATCTTG 
GTTGAAGAAA CCAAAAACAA CAGTAACGTG CGCTTTGTGT TTCGATTGAC TGGCGGAGAT 
TTCGCATTAA TTTGCGAGGC CATGGAAAAG CCAGTAAGAG ATCTCATGCT GACTAACATA 
TCAAAACAAT GCGCTAGCGC CTCGCCATTA CGCGATGGCA CCAAAGCCAC GTATATCGGT 
ATTACTCGCT TTACCGGCAC TATGTCTATG CCGCAAGTCA TGGAAAGTGT GGATAGTGCG 
CTTATCGCTG CCATGAAAAC CCAAAGCGGT TGGGAGTTGG CCTCGGAAAT ATCTCACGTA 
CACAGCAATA CGCGATGGCG CGAACGACTT AACTATATTG TCGCTCAGCA GTATGCCGAC 
ATTATGATTC AGCCGGTTAT GAATATAGAG CAAAATATTC CCGCTTACTA TGAGACATTT 
GGGCGCTTTA AAGACAAAGA TACCAACGAA GTCATACCCA TGTCGCAGCT TATCCCTGCT 
TCTGAGCGAT TAGACCTAAT ACCACAAGTC GACAGACTGG TTACCAGCAT CGTGTTTAAA 
AAGATGGAAG TGACCTCTCA GCAAGTCGCC GTCAATTTAA GTATTACGTC AATTGCCAAT 
GGTGAATTTA GAGCTTGGTT GGTTAACGAA TTAACCCAGC GACAAGCGCT GTGCCCTAGG 
CTTCTTTTCG AAGTTGAAGA TGCCGCGCTA ATACAGTATC GAGACTACGC GGAATCGCTG 
TGCAGACAAT TGATCAACCT GGGTTGTCGA GTCACTATTG AACACTTTGG CGATCACTTT 
GCATCCCTCT CTGGCCTACG CGCGATTAAA CCGCAGTTTG TTAAAATTTC CGGAAGACTG 
ACCCAAGGTA TTCATACCAA TAAAGAAAAC CAGCTGTTCG TGTCTAGCCT TATCAATATA 
GCGACTGGCC TGAATATAAA AGTAATTGCA GAAATGGTGG AAACCGAAGC CGAATCTGTG 
GCTTTGAACA AGCTAGGTGT AGAACATCAG CAAGGCTATT ATTTTGCTAA ACCTGCACTT 
TGGAATGTGT ATTAA 

 

Protein sequence

MKLTNQTNWG IVALLFLAFT ALSVAELREL QLNTSEAVTL QAEKSAANYR KNIDQLSSLS 
PQTEELVLST LLESTVSQPH ISYAAIVDAS GSVVAKREAA VQNAVPSWFT SIDSNSELEK 
RVPLGDSQRA LVLTSNKVEV YTRFTNVLLR NIIAFVALSL LVSLLVAVMN RRFKRPIEDT 
VRKLNDMGSH NFTSPQVSAS SGDCEQLTST VNTLSSTLAS KFDELTRQSE LFKKEASKDS 
LTKLANRGAF ERHMRALLNE NATSQEKELI IVRLAQLASI NTKLGMVPGD NYVKAIANIL 
VEETKNNSNV RFVFRLTGGD FALICEAMEK PVRDLMLTNI SKQCASASPL RDGTKATYIG 
ITRFTGTMSM PQVMESVDSA LIAAMKTQSG WELASEISHV HSNTRWRERL NYIVAQQYAD 
IMIQPVMNIE QNIPAYYETF GRFKDKDTNE VIPMSQLIPA SERLDLIPQV DRLVTSIVFK 
KMEVTSQQVA VNLSITSIAN GEFRAWLVNE LTQRQALCPR LLFEVEDAAL IQYRDYAESL 
CRQLINLGCR VTIEHFGDHF ASLSGLRAIK PQFVKISGRL TQGIHTNKEN QLFVSSLINI 
ATGLNIKVIA EMVETEAESV ALNKLGVEHQ QGYYFAKPAL WNVY