Gene MADE_02471 details

Gene Information

• Locus tag: MADE_02471
• ID: 6778621
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Alteromonas macleodii 'Deep ecotype'
• Kingdom: Bacteria
• Replicon accession: NC_011138
• Strand: +
• Start bp: 2684145
• End bp: 2686082
• Gene Length: 1938 bp
• Protein Length: 645 aa
• Translation table: 11
• GC content: 41%
• IMG OID: 642755910
• Product: diguanylate cyclase/phosphodiesterase
• Protein accession: YP_002126761
• Protein GI: 196157272
• COG category: [T] Signal transduction mechanisms
• COG ID: [COG2200] FOG: EAL domain
• TIGRFAM ID: [TIGR00254] diguanylate cyclase (GGDEF) domain

Plasmid Coverage information

• Num covering plasmid clones: 5
• Plasmid unclonability p-value: 0.323013
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGACTAT CTACCCAACT AAGCACAAGC TTACTCGTTT TTTTGATACT GGTTTTCGCC 
GGTTCGTTTT TTATAAACGT GAAACTAACC AGAGAATATG TAAACGAGCA GCTTGCTACC 
CATGCACAAG ACACCGCAAC CTCTTTGGGG CTTTCTATTA CCCCGTACTT AGGCGACGCT 
AACGGCCTTA TTGTGGCGGA GACTATGGTT AATGCCATTT TTGATAGAGG CTTCTATCAG 
TACATCACCA TTACCGACAT GGAAGGCAAT TTACTGATTG AACGGCGTAA TCCAAACACG 
GTTGATACTG TTCCTACTTG GTTTACCGAT ATTGTAGAAG TTAACCCACC CGTCGAAAAA 
ACAGAATTGA ATGACGGTTG GACGATGGCC GGTGAACTAG CGGTTCAAAG TCACCCTGGG 
CTTGCCAATG AGACCTTATG GGAAAGTGTT AAACAAAGCG CCTTTATGTT TTTTGCAGCC 
TTCGTTTTTG CCTATATCGC CCTACTCTTT ATCATTACTG CCATTACAAA ACCCCTTCGT 
ATTGTCGTAA ACAAAATTGA AGATATTCAA AATCAAAAGT TTTCCCACAT TAACTACAAA 
CCTTTTACGA AAGAACTTTC TTTTATAACT CAGGCGGTAA ACAGGCTTTC TTCGTCTGTT 
GAAGTAATGT TTAAAGAGTT AACCCAAAAG GCCGAGCAGT TCAGAATTCA AGCCTTTGAA 
GATAGCCTTA CCGGGGTTCA AAACAGAAGC GCGTTTACGC GGCATATGAA TGCACTTTTA 
AGCAAAACTG CCACCTCGGA CGAAGGCTAT GTGATGTTAA TACGCTTAGC ACAACTAAAC 
GCAATTAATA TGACGTTAGG TGCACAAGAT GGCGATAACT ATGTGACCGC CGTTGCTAAA 
GAGCTTAAGA GTTTTACGTC CAGTATTCAG GAAACGGCAT TTCTATTTAG GGTATCGGGT 
GCCGATTTCG TTTTGGTAAC AGAAGCGATG GCAAAGCAAG ATTGTGAAGC GCGTTTAAAA 
GTACTTAGCA CTACCCTTTC TCATTGCAAT CCACTCAAAG ATGGCAGTAA AGCTGTGTGG 
ATAGGCGCAG CGCAATTTAA CGACGAGCAA TCGTTTTCAG AAATTATGGA AAACGCTGAT 
AGCGCGCTTA TGGCTGCCAC AAAGCAACCC AATGGCTGGC AATTTGCGTC TGAACTCACT 
TATATTCATA GTAATACTGC TTGGAAAGAG CGTTTAAACC AGGTTTTAGA GCAGCAGTAC 
GCAGATATTC TTATTCAGCC TGTTATGAAT GTTGAAGAAA ATATCCCTGC TTATTATGAA 
GCTTTTGCGC GTTTTAAAGA AAAAAACAGT GGCAATGCCA TACCTATGAC GCAACTAATA 
CCCGCATCGG AGCGTTTAAA CCTAATACCT GAAGTCGATA AGCTGGTGGT AAGTCTTGTA 
CTGAGTAAAC TAACTAAATC TAGCCGTGAT GTCGCTATCA ACATTGCAAA CGCTTCTTTA 
GCCAGCGCGT CGTTCAGGCA ATGGCTGCTC GGTTTACTGA ACCAAAATAC AGCGCTATGC 
ACCCAATTGG TGTTCGAGTT AGAAGATTCT GCCTTAATTC ATCATAAAGA CGATGCAATA 
CTTTTCTGTA AGTCGCTAGT TAATTTAGGT TGTAAGATAA CCATTGAACA TTTTGGAGAC 
AATCTTGCAT CGTTAGCTGG GTTAAGGGCT ATACAGCCTC ATTTTGTAAA GATTTCCGGC 
AAACTTACGA AAGATATTCA CGCAGACCAA GACAGTCAGT TATTTGTATC TAGTTTATTG 
AGTATTGCCC GCGGGTTAAG TATTAACATT ATCGCTGAGC TTGTTGAAAA TGAAGCAGAG 
TCTGTCGCTT TAACCCGATT AGATGTTGTA TACCAACAAG GTTTCTATTT TGCGAAACCT 
TCGCTATGGC AGTATTAA 

 

Protein sequence

MRLSTQLSTS LLVFLILVFA GSFFINVKLT REYVNEQLAT HAQDTATSLG LSITPYLGDA 
NGLIVAETMV NAIFDRGFYQ YITITDMEGN LLIERRNPNT VDTVPTWFTD IVEVNPPVEK 
TELNDGWTMA GELAVQSHPG LANETLWESV KQSAFMFFAA FVFAYIALLF IITAITKPLR 
IVVNKIEDIQ NQKFSHINYK PFTKELSFIT QAVNRLSSSV EVMFKELTQK AEQFRIQAFE 
DSLTGVQNRS AFTRHMNALL SKTATSDEGY VMLIRLAQLN AINMTLGAQD GDNYVTAVAK 
ELKSFTSSIQ ETAFLFRVSG ADFVLVTEAM AKQDCEARLK VLSTTLSHCN PLKDGSKAVW 
IGAAQFNDEQ SFSEIMENAD SALMAATKQP NGWQFASELT YIHSNTAWKE RLNQVLEQQY 
ADILIQPVMN VEENIPAYYE AFARFKEKNS GNAIPMTQLI PASERLNLIP EVDKLVVSLV 
LSKLTKSSRD VAINIANASL ASASFRQWLL GLLNQNTALC TQLVFELEDS ALIHHKDDAI 
LFCKSLVNLG CKITIEHFGD NLASLAGLRA IQPHFVKISG KLTKDIHADQ DSQLFVSSLL 
SIARGLSINI IAELVENEAE SVALTRLDVV YQQGFYFAKP SLWQY