| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | MADE_02437 |
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| Symbol | |
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| ID | 6776962 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Alteromonas macleodii 'Deep ecotype' |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011138 |
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| Strand | + |
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| Start bp | 2640165 |
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| End bp | 2643662 |
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| Gene Length | 3498 bp |
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| Protein Length | 1165 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 642755876 |
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| Product | transcription-repair coupling factor |
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| Protein accession | YP_002126727 |
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| Protein GI | 196157238 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
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| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.272439 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACAGCCA CTTTATTATC GCTACCATTA CCTGCGCCTA AAAAAGAAGC CGCTTCACAA
GACCACAAGC ATTGGGGCCA GCTTCAAGGC AGCAGCGCCG CGCTATGTAT CAGTCAAGCA
CTTAGCCAGT ATAAAGGCCC TATTGTACTT ATCACCGCCG ACACGCCTTC GGCGATGAAG
CTTGAAAAAG AAATAGCGTT TTTCTTAAGC GATAATAAGC ATAATACGCC CATTACTCTC
TTCCCTGACT GGGAAACGCT GCCTTATGAC TCGTTCTCGC CCCATCAGGA TATTGTTTCC
CAGCGTTTAG AAACCCTGTT TCGTTTTACT CAGCAAGGCG ATGGCATTTT CATTGTTCCT
GTTAACACGC TAATGCAGCG TCTAGCGCCC ACCGACTATT TGGCTAAGTA CTTACTGATG
CTAAACAAGG GCGACACGTT AGACAGAGAC CAATTCAGAC GAAACCTAGA GCAAGCCGGC
TACTTACATG TAAGCCAAGT AATGAGCCAT AGCGAATTTT CTGTGCGCGG CAGTATTATC
GACTTGTTCC CAATGGGAAG CGACCAACCG TTTCGTATCG ACTTATTCGA CGATGAAATA
GACTCTATTC GCTACTTCGA TACAGAAACC CAGCGTTCTG GCGAGTCAGT CAATAAAATA
CGTTTGTTGC CAGCCCGTGA ATTCCCTACC GATAAAGAGG CCATTACGCT TTTCCGGCAG
CAGTTTTTGG AAAAGTTCGA TGCGAACAAC GCGTCAGAAA GCGTATTTTC CCAAGTAAGC
AAAGGCACAA TGCCAAGTGG CGTAGAATAC TACCTTCCTC TGTTTTTCAA AAACACCGCA
ACGCTGTTTG ATTACCTGCA TCCAAAGAGC TTGCTGCTGC TTCACGGCGA TGTACAAGAC
GCCAGTGAGT TTTTCTGGGC CGACGTACAA GAGCGCTACG AGCAGTATCG ATATAATTTA
GCGCGCCCCC TGCTTGCGCC TGATGAACTC TTTTTACCTA TAAACGAACT GTTTGGCGCA
ATTAAGCAGT GGCCCCGCGC ATCGTTAACC AACGCCGTAC TTGAAGAAAA GCCGGGCACC
ACTAATTTAC AGTGCGAAAA GCTTGATGAC ATTGCCATTA ACTCGCAGAA AAAAGTGCCT
GCCGAGCGCT TAATTAAAAC AGTAAACCAC GCCACCGACA ACGGGGCTAA AGTACTGTTT
TGTGCAGAAA CCCAAGGCCG TCGAGAAGGC TTGCTGTCGG TGCTTGCTAA AGCCGGCATA
AAGCCCACTA TCGTAGACAG TTACAGTGAT TTCATCGCAA GCCACAACAG TATTGGTATT
ACGGTTGGCA TGGTGGATAA CAGCTTCCGC TGGCAAACCG AGGAAGGCGA GCTGTTGTTT
ATAACTGAAA CCGAGCTGCT AGGCCAAAAG GTTAGCCAGC GTCGCCTACG TGATAAAAGA
ACCGCTACCG ATGAAAGCGC CATTATTCGC AACTTGGCCG AGCTTTCTAT TGGCCAACCC
GTGGTGCACT TAGATCACGG CGTAGGTCGC TATTTAGGGC TACAAACCCT CGACGCGGGT
GGTGTAACCA CAGAATATCT GTGTATTGAA TACGCTAAAC AATCGAAATT ATATGTACCG
GTAGCCTCGC TTCATTTGAT TTCTCGCTAC ACCGGTGGCG ATGCAGACAG TGCGCCAGTT
AGCGCCTTAG GCTCAGACGC GTGGACGAAA GCGAAGCAAA AGGCGGCTGA AAAAGTACGT
GACGTAGCCG CTGAGCTGTT AGACGTATAC GCGCGACGCG CGGCGAAACC CGGCTTCGAA
TACAAGATTA ACTGGGACGA TTATCAAGCC TTTGCCGATA GTTTTCCCTT TGAAGAAACA
CCCGACCAAG CCCAAGCTAT TGCAGCGGTT ATGCATGATA TGGGCAGCCC GTCAGCGATG
GACCGCCTAG TATGCGGAGA CGTGGGCTTT GGTAAAACTG AAGTTGCCAT GCGCGCCGCT
TTCCTTGCCG CAAATGCAGG TAAACAAGTG GCTATTTTGG TGCCGACAAC GCTACTTGCT
CAGCAGCATT ATGAAAACTT TAAAGACCGC TTCGCAGCCT GGCCGTTTGA AATTGAAGTA
ATGAGCCGTT TTGTTAGCGG TAAAGCGCAA AAGTCGGTGG TTGAACGTAT TGGCGAAGGT
AAAGTAGACA TTGTCGTGGG AACGCACAAA CTGCTCTCTA GCGATATAAA GTACAAAGAC
TTAGGGCTTG TCATCATAGA CGAGGAACAC CGCTTCGGTG TTCGCCAAAA AGAAAAACTG
AAATCGCTGC GCGCCGATGT TGATATTCTC ACGCTTACCG CAACCCCTAT TCCACGTACG
CTAAACATGG CCCTTTCCGG CATGCGCGAC TTGTCGATTA TCGCCACCGC CCCTGCCCGT
CGTTTGTCCA TTAAAACGTT TGTGCAGCAG CGCAATAAAG CGGTTATTCG CGAAGCCATT
ATGCGTGAAA TTTTACGCGG TGGTCAGGTT TACTTCCTTC ACAATGAAGT TGAAAGTATT
GCACGAACCG TAGAAGAGAT TGCCGAAATT GTTCCCGAAG CACGCATTGC AATGGGGCAC
GGTCAAATGC GCGAGCGAGA GTTGGAAAGC GTGATGAGCG ACTTTTATCA CCAGCGCTAC
AACGTGCTTG TGTGTACCAC TATTATCGAA ACGGGCATTG ATGTACCTAG TGCGAACACC
ATTATCATGG ATAGAGCCGA CCATTTAGGT TTAGCGCAGC TTCACCAACT GCGCGGGCGT
GTGGGCCGTT CACATCACCA AGCTTATGCG TATCTGCTAA CGCCGCACCC TAAGCGCATG
ACAAAAGATG CCGTGAAGCG CTTAGAAGCG ATATCTCAGT TAGAAGACCT AGGTGCAGGT
TTCGCACTGG CTACTCACGA TTTAGAAATA CGTGGTGCAG GCGAGCTTTT AGGCGACGAC
CAATCGGGTC AAATCGCAAG CGTAGGGTTT AGCCTTTACA TGGACATGCT TGATAAAGCC
GTTAATGCCC TTAAAGACGG CAGAGAGCCG TCGCTAGACG ATGCGATGTC TGGCCATACC
GAAGTAGAGC TTCGCATTCC TGCCCTATTA CCGGAAGATT ACATTGCCGA TGTAAATACA
CGCTTATCAC TGTATAAGCG CTTGGCGAGC TGTGCGACGC AAGATGACAT TGATGAGTTC
CAGGTAGAAT GTATCGACCG CTTTGGCCTG CTGCCAGAGC CGGCGAAGAA CTTAATTGAA
GTGGCTGAAA TTAAACTAAA AGCCCATGAT TTAGGCATTC TAAAAGTAGA CTTGTCGGCA
CAAGGCGGTA CCATAGAGTT CAAAGAGAAC ACGAAGGTCA ATCCGGGCTA TATTATTAGC
CTTGTACAAA CCAAGCCGAA CACCTTCAAA TTTGAAGGCA GCCAAAAACT GCGTTTGGTG
AAAAAGACCG ACACAGCTAA AGCGCGAATT GCGTTCATTA GCGATATTAT TGCCGATTTT
GCAAAGGAGT CGCGGTAA
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| Protein sequence | MTATLLSLPL PAPKKEAASQ DHKHWGQLQG SSAALCISQA LSQYKGPIVL ITADTPSAMK
LEKEIAFFLS DNKHNTPITL FPDWETLPYD SFSPHQDIVS QRLETLFRFT QQGDGIFIVP
VNTLMQRLAP TDYLAKYLLM LNKGDTLDRD QFRRNLEQAG YLHVSQVMSH SEFSVRGSII
DLFPMGSDQP FRIDLFDDEI DSIRYFDTET QRSGESVNKI RLLPAREFPT DKEAITLFRQ
QFLEKFDANN ASESVFSQVS KGTMPSGVEY YLPLFFKNTA TLFDYLHPKS LLLLHGDVQD
ASEFFWADVQ ERYEQYRYNL ARPLLAPDEL FLPINELFGA IKQWPRASLT NAVLEEKPGT
TNLQCEKLDD IAINSQKKVP AERLIKTVNH ATDNGAKVLF CAETQGRREG LLSVLAKAGI
KPTIVDSYSD FIASHNSIGI TVGMVDNSFR WQTEEGELLF ITETELLGQK VSQRRLRDKR
TATDESAIIR NLAELSIGQP VVHLDHGVGR YLGLQTLDAG GVTTEYLCIE YAKQSKLYVP
VASLHLISRY TGGDADSAPV SALGSDAWTK AKQKAAEKVR DVAAELLDVY ARRAAKPGFE
YKINWDDYQA FADSFPFEET PDQAQAIAAV MHDMGSPSAM DRLVCGDVGF GKTEVAMRAA
FLAANAGKQV AILVPTTLLA QQHYENFKDR FAAWPFEIEV MSRFVSGKAQ KSVVERIGEG
KVDIVVGTHK LLSSDIKYKD LGLVIIDEEH RFGVRQKEKL KSLRADVDIL TLTATPIPRT
LNMALSGMRD LSIIATAPAR RLSIKTFVQQ RNKAVIREAI MREILRGGQV YFLHNEVESI
ARTVEEIAEI VPEARIAMGH GQMRERELES VMSDFYHQRY NVLVCTTIIE TGIDVPSANT
IIMDRADHLG LAQLHQLRGR VGRSHHQAYA YLLTPHPKRM TKDAVKRLEA ISQLEDLGAG
FALATHDLEI RGAGELLGDD QSGQIASVGF SLYMDMLDKA VNALKDGREP SLDDAMSGHT
EVELRIPALL PEDYIADVNT RLSLYKRLAS CATQDDIDEF QVECIDRFGL LPEPAKNLIE
VAEIKLKAHD LGILKVDLSA QGGTIEFKEN TKVNPGYIIS LVQTKPNTFK FEGSQKLRLV
KKTDTAKARI AFISDIIADF AKESR
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