| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | MADE_02260 |
|---|
| Symbol | |
|---|
| ID | 6775812 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Alteromonas macleodii 'Deep ecotype' |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011138 |
|---|
| Strand | - |
|---|
| Start bp | 2424473 |
|---|
| End bp | 2425141 |
|---|
| Gene Length | 669 bp |
|---|
| Protein Length | 222 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 642755694 |
|---|
| Product | Response regulator, LuxR family (CheY, HTH domains) |
|---|
| Protein accession | YP_002126550 |
|---|
| Protein GI | 196157061 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCCGTAA AAATTTTGAT TGCTGACGAT CATCCTTTGT TCAGGGCTGC TATGTGTCAT
GCACTAACCA GCGTGGAGCA CCTCGAGCTT GTAGAAACAT CCACATTCCC CGATACCCTT
TCTTATCTTG AAGACTTTCA AGACATAGAC CTGCTTTTCT TAGATCTTAC CATGCCAGGC
AATGAAGGGT TAAATGGCCT TGCACAAGTA CATGCGCTAT ACCCTGATGT GCTTGTAATC
GTCATTACCG CACAAGAAGA GGCAGACGTC ATGGCAAAGT CTTTTGCATT AGGTGCAAGT
GGTTTTATAC CTAAATCGGC CTCGGTTGAG TGTATTATTG ATGCAGTAAA TACCGTATTG
GATGGGGAAA CTTGGATACC CCCAACAGTT CAGGTGCCTT CGGATTCGCA ACAAAACTCT
GCTGCCTCTA ATGCGAGTAG TGTATCCGAC CAAGGTGATT TCACCGCTAG GTTGAAACAA
CTCACACCTC ATCAACTTAA AGTGTTAAGA ATGGTGTCAG ATGGCTTGCT CAACAAGCAG
ATTGCTTACG AACTGGCTAT TTCCGAATCT ACCGTTAAAC AACATGTGTC AGCCGTATTA
AGAAAACTTG GTGTTATCAA CAGAACCAAG GCGGGTATTG CGTTCAAAAA TGCAATGCAC
TTAAATTAG
|
|---|
| Protein sequence | MSVKILIADD HPLFRAAMCH ALTSVEHLEL VETSTFPDTL SYLEDFQDID LLFLDLTMPG
NEGLNGLAQV HALYPDVLVI VITAQEEADV MAKSFALGAS GFIPKSASVE CIIDAVNTVL
DGETWIPPTV QVPSDSQQNS AASNASSVSD QGDFTARLKQ LTPHQLKVLR MVSDGLLNKQ
IAYELAISES TVKQHVSAVL RKLGVINRTK AGIAFKNAMH LN
|
|---|
| |