Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | MADE_02256 |
Symbol | |
ID | 6779214 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Alteromonas macleodii 'Deep ecotype' |
Kingdom | Bacteria |
Replicon accession | NC_011138 |
Strand | + |
Start bp | 2419428 |
End bp | 2422448 |
Gene Length | 3021 bp |
Protein Length | 1006 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 642755690 |
Product | Multidomain protein, contains Na+/proline symporter PutP-like domain, sensory histidine kinase and receiver domain |
Protein accession | YP_002126546 |
Protein GI | 196157057 |
COG category | [E] Amino acid transport and metabolism [R] General function prediction only [T] Signal transduction mechanisms |
COG ID | [COG0591] Na+/proline symporter [COG4251] Bacteriophytochrome (light-regulated signal transduction histidine kinase) |
TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.371064 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCTAAGTA TATGGACGGT TGGCACTATC GTTGGTTTTT ACCTTCTCGC GCTTTTTGCT TTGGCATTTT GGGGCGACAG GCATTTACGC GATAACCGGC AGCACCCTGT TCTCTATAGC CTTGGTTTAG GTGTGCACTG TACCTCTTGG GCGTTTTTCG GCACTACATC GCAAGCGGCA CAATACGGCT GGGCAGTTAT CCCTACGTAT TTGGGTATTA CGTTGACCAT GGCATTTGCC TTTCCCGTAA TACTTCACAT AAGTAGACTA TGCCAGCAAC ACAACATCAG CTCGCTGGCT GACCTCATAT CATTGAAGTA CCAACACTCT CATTTAATTG CCGCTCTTAT CACTTTACTG TGTTTTTTTG GTGTTGTGCC CTATATAGCA CTTCAGCTAG ACGCTATTAC AAAGTCTATT AATTTACTCA CTGGTGAGCC CCAAACCACC ACACCTTGGT TAAGCATTTA TGTGGCCGGT TTGCTCGCCA TATTTGCTAT AACCTTCGGC ACGCGTACGC TGAATTTAAC TGATAAGCAC CCCGGTTTGC TGCTTACTAT AGCATTTGAG TCAATTATTA AGCTTGTCGC CCTGTGGGCT GTGGGTATTT TTGTTTGCTT CTTTTTATTC GATGGCGCAT TAGATTTAAT ATCTAACGCC GCATCCAATG ACAGTGCTAG AGACGTCATT TATGCCGATA GCGCGCCATG GGTCTATTTA TCACATGTAG CCCTTGGTGT TTGCTCTATG TTTGTACTGC CACGCCAATT CCATATGAAC TTTGTTGAGC AGAACGGTGA GGGAGAGCTT AGAACAGCAA GGTGGCTATT TCCCCTCTAT TTATTTGGAA TGACCCTTTT TATTATTCCT ATTGCACTTG CAGGAAAAAT GCTGCTGCCG GTGGGTACAA GCTCTGATGC GTACGTGCTT GCCCTGCCTT TACATACTGA AAATATCGCG CTGTCGTCCT TTGCTTTCAT AGGCGGTCTT TCTGCCACCA CCAGCATGGT GATTGTTGCA ACTCTAGCCA TGGGCATAAT GATATCAAAC AATGTTGTTA CGCCGCTGTG GCTGAAAGCC CGGTTAAAAA CGTCTCCAAA CCAGTCAATG CAACCAAGTA AGATCCTTTC TATACGTCGT ATTACCGTAG TAGTCGTTCT TAGCATTGCG CTCTGGTATC ACCTTAATAT AAGTCAGGCC GCGCCCTTAG TTAAAAGTGG TGTAATTGCC ATTGCGCTGT TAGCACAGTG CATGCCCGTG TTAATGTTCG GAATCTATTG GCGGCGTAGC AGCAAAGCCG CTGCTGTATC CGCTTTATTA GTGGGTTCTA CGTGCTGGGC GATATTTCTA CTCTACCCCA GCCTGCTTTC TAGCTACTAT TTTAACCCTG CTCCAACCGA CCAAGCGCTT GGGCTAGGAT TTGCCTTCTC GTTACTGGCT AATTGCATTA CATTTGTTGT TGTGGCGTTC ATTTCTTCGC GACACGGGAC AAACGAAACC GACACGACAC TGCAAAGCAA TTCGCCCCCC AATTTACTCG TTAAAGTGCG TGACTTAATG GCGTTAACGG AACGGGTACT CGAAAGCGCC ACCCATTCCC AGCTTGTAAA GCAACTTACG ATTGATGTTG AGCGTGCATC AAGCAGCGGC TATGCCAGTC AGGCCCTTAT CGATAGGGTG AATAAATTGC TTGCCGCCCA AGTGGGAGCG CCCAGTGCTC GAATATTACT AGGCGCTATC GCGGATACTG GTAGAGCTGC CTTGCCGGAG TTAGTTGACT GGGTAGAAGA AGCAACACAG TCTTTTCAAT TCAATCACGA GGTACTTCAA TCATCGGTAC AAAATATTGA ACAGGGAATC AGTGTAGTTG ATGACAAGCT CCAATTACTG GCATGGAATG ATAGATACGT AGAGCTTTTT GCTTACCCTA AAGGCTTTTT AAAAGCAGGT ATGCCGATTA CCGATATACT GAGTTACAAC GCTAAGCGGG GCTTGTTCAA CCCCTCCTCC ATTGATAAAC GGGTGAGCTA TATGCGTGAG GGTACCCGCC ACAAGCATAT CCGCAAGCAG CCTGATGGAA AAGTGATAGA GCTAAACGGT GCGCCCCTTC CTGGTGGCGG CTACGTGACT ACCTATAGCG ATATCACTGA ATACATGGCA ATTCAAAAAG AATTAGAAAG TGCAAAAGAA GATCTGGAGG AAAGAGTTGC TCAACGCACT GCAGAACTAG AGGAAGCTAA GCTTCAGGCT GATAAAGCCA ACGAAAGCAA AACCAAGTTT TTGGCGGCAG CTGGCCACGA TCTCATGCAG CCTTTTAACG CCGCCACATT ATTTGCCAGC ATGCTGAGCA AAAAAACGCA AGGTAGCGAA CTGGCTACGC TGTCTGAAGG CGTGGTGAAT TCGCTAGATA ACGCTCAGAG CTTACTTTCT ATGTTGCTGG ATATGACAAA ATTAGATGCT GGCGTTCTCA TACCGCAAAA GACTGAATTT GCCATCGATG AGATGCTATC TTCGTTGGTA CAAGAGTTCA GTGTTATTGC AAAGCAAAAA GGGGTTACGC TGAGGTATGT ACAAACGAAT GTCTTGGTGT ATTCAGACAA AAACTTGCTG CGACGTGTGC TGCAAAACTT ATTGTCCAAC GCGGTTCGCT ATACCCCTAA AGGCAGCATT TTAGTGGGCG TTAGGCGCAT ACAAACTGCA AATACCGAGA AAAAAATAAA GCTTTGTGTT TACGATACCG GTTTAGGTAT TGCTGCACAC CAACAGCATG AAATTTTTAG TGAGTTCCAC CAGCTGGATA ACAACAAAGG TGAAGGGATT GGATTAGGCT TAACTATTGT AGAGAAAATT TGTCGATTAC TCGGCCATCA AGTAGGGCTA ACCTCATTAC CGGGAAAAGG TAGCTGTTTT AGTGTTACAG CAACACGCAT AATGCATACG AGTGGTAATT CAAAACAAGT GCTGAAAACG GAAAGCTATA ACAACGGCGT TTTTCAAGGT AGTTGTCGCC TGAGCTGTTA A
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Protein sequence | MLSIWTVGTI VGFYLLALFA LAFWGDRHLR DNRQHPVLYS LGLGVHCTSW AFFGTTSQAA QYGWAVIPTY LGITLTMAFA FPVILHISRL CQQHNISSLA DLISLKYQHS HLIAALITLL CFFGVVPYIA LQLDAITKSI NLLTGEPQTT TPWLSIYVAG LLAIFAITFG TRTLNLTDKH PGLLLTIAFE SIIKLVALWA VGIFVCFFLF DGALDLISNA ASNDSARDVI YADSAPWVYL SHVALGVCSM FVLPRQFHMN FVEQNGEGEL RTARWLFPLY LFGMTLFIIP IALAGKMLLP VGTSSDAYVL ALPLHTENIA LSSFAFIGGL SATTSMVIVA TLAMGIMISN NVVTPLWLKA RLKTSPNQSM QPSKILSIRR ITVVVVLSIA LWYHLNISQA APLVKSGVIA IALLAQCMPV LMFGIYWRRS SKAAAVSALL VGSTCWAIFL LYPSLLSSYY FNPAPTDQAL GLGFAFSLLA NCITFVVVAF ISSRHGTNET DTTLQSNSPP NLLVKVRDLM ALTERVLESA THSQLVKQLT IDVERASSSG YASQALIDRV NKLLAAQVGA PSARILLGAI ADTGRAALPE LVDWVEEATQ SFQFNHEVLQ SSVQNIEQGI SVVDDKLQLL AWNDRYVELF AYPKGFLKAG MPITDILSYN AKRGLFNPSS IDKRVSYMRE GTRHKHIRKQ PDGKVIELNG APLPGGGYVT TYSDITEYMA IQKELESAKE DLEERVAQRT AELEEAKLQA DKANESKTKF LAAAGHDLMQ PFNAATLFAS MLSKKTQGSE LATLSEGVVN SLDNAQSLLS MLLDMTKLDA GVLIPQKTEF AIDEMLSSLV QEFSVIAKQK GVTLRYVQTN VLVYSDKNLL RRVLQNLLSN AVRYTPKGSI LVGVRRIQTA NTEKKIKLCV YDTGLGIAAH QQHEIFSEFH QLDNNKGEGI GLGLTIVEKI CRLLGHQVGL TSLPGKGSCF SVTATRIMHT SGNSKQVLKT ESYNNGVFQG SCRLSC
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