Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | MADE_02001 |
Symbol | |
ID | 6776047 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Alteromonas macleodii 'Deep ecotype' |
Kingdom | Bacteria |
Replicon accession | NC_011138 |
Strand | + |
Start bp | 2158099 |
End bp | 2158767 |
Gene Length | 669 bp |
Protein Length | 222 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 642755438 |
Product | putative solute/DNA competence effector |
Protein accession | YP_002126299 |
Protein GI | 196156810 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG3109] Activator of osmoprotectant transporter ProP |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.101702 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGAATCAC CAGAGAAGTT TACCAATAGT AAGGAAGTAA TAGCTTTCCT TGCAGAGACC TTTCCGAAAT GTTTTAGCAT TGAAGGCGAG GCCCGCCCAC TCAAGATCGG TATTTTTCAA GATCTTGCCG AACGTTTAGA AGAAGATGAA CGCGTAAGTA AAACATTACT TCGTTCAACG CTTCGCCATT ACACCAACAG CTGGCGTTAT TTGTACAGCA TCAAAGAAGG TGCTAATCGC GTGGACTTAG ACGGCGTAGA AGGCGATGCT ATTGAAAAAG AGCATGCAGA CCACGCTAAA CAACAGCTAG ATGAAAGCAA AGCTAAAGCT GCCGAAAAGC GCAAAGCTAA GCTAGCTCAA CAGCCCAAGC GCAAAGATAA ACGTCAATTT AACCGTCCAA AAGGTGAAAA ATCTGCAAAT TCGGACCATG CTGATACTAA GCGTGGAACT AAACCGAAAA ATAACAGACC AAACACAACA CCACCTGCGA AATTGACAGA TAGCGATTTA CAACAAGGTA CGCAAGTTAC CGTTAAATTA GGTAAAGCAC CTATGCCAGC AGTAATCACC GAAGTTGCTA AAGATGGTAT TCACGTTCAA CTAGACTCAG GCATGGTAGT TAAAGTAAAC GCAGACGCTT TACGTTTGGC ACGCTCCAAG AGGTCGTAA
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Protein sequence | MESPEKFTNS KEVIAFLAET FPKCFSIEGE ARPLKIGIFQ DLAERLEEDE RVSKTLLRST LRHYTNSWRY LYSIKEGANR VDLDGVEGDA IEKEHADHAK QQLDESKAKA AEKRKAKLAQ QPKRKDKRQF NRPKGEKSAN SDHADTKRGT KPKNNRPNTT PPAKLTDSDL QQGTQVTVKL GKAPMPAVIT EVAKDGIHVQ LDSGMVVKVN ADALRLARSK RS
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