Gene MADE_02001 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMADE_02001 
Symbol 
ID6776047 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAlteromonas macleodii 'Deep ecotype' 
KingdomBacteria 
Replicon accessionNC_011138 
Strand
Start bp2158099 
End bp2158767 
Gene Length669 bp 
Protein Length222 aa 
Translation table11 
GC content43% 
IMG OID642755438 
Productputative solute/DNA competence effector 
Protein accessionYP_002126299 
Protein GI196156810 
COG category[T] Signal transduction mechanisms 
COG ID[COG3109] Activator of osmoprotectant transporter ProP 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.101702 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGAATCAC CAGAGAAGTT TACCAATAGT AAGGAAGTAA TAGCTTTCCT TGCAGAGACC 
TTTCCGAAAT GTTTTAGCAT TGAAGGCGAG GCCCGCCCAC TCAAGATCGG TATTTTTCAA
GATCTTGCCG AACGTTTAGA AGAAGATGAA CGCGTAAGTA AAACATTACT TCGTTCAACG
CTTCGCCATT ACACCAACAG CTGGCGTTAT TTGTACAGCA TCAAAGAAGG TGCTAATCGC
GTGGACTTAG ACGGCGTAGA AGGCGATGCT ATTGAAAAAG AGCATGCAGA CCACGCTAAA
CAACAGCTAG ATGAAAGCAA AGCTAAAGCT GCCGAAAAGC GCAAAGCTAA GCTAGCTCAA
CAGCCCAAGC GCAAAGATAA ACGTCAATTT AACCGTCCAA AAGGTGAAAA ATCTGCAAAT
TCGGACCATG CTGATACTAA GCGTGGAACT AAACCGAAAA ATAACAGACC AAACACAACA
CCACCTGCGA AATTGACAGA TAGCGATTTA CAACAAGGTA CGCAAGTTAC CGTTAAATTA
GGTAAAGCAC CTATGCCAGC AGTAATCACC GAAGTTGCTA AAGATGGTAT TCACGTTCAA
CTAGACTCAG GCATGGTAGT TAAAGTAAAC GCAGACGCTT TACGTTTGGC ACGCTCCAAG
AGGTCGTAA
 
Protein sequence
MESPEKFTNS KEVIAFLAET FPKCFSIEGE ARPLKIGIFQ DLAERLEEDE RVSKTLLRST 
LRHYTNSWRY LYSIKEGANR VDLDGVEGDA IEKEHADHAK QQLDESKAKA AEKRKAKLAQ
QPKRKDKRQF NRPKGEKSAN SDHADTKRGT KPKNNRPNTT PPAKLTDSDL QQGTQVTVKL
GKAPMPAVIT EVAKDGIHVQ LDSGMVVKVN ADALRLARSK RS