Gene MADE_01896 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMADE_01896 
Symbol 
ID6776129 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAlteromonas macleodii 'Deep ecotype' 
KingdomBacteria 
Replicon accessionNC_011138 
Strand
Start bp2044685 
End bp2045707 
Gene Length1023 bp 
Protein Length340 aa 
Translation table11 
GC content42% 
IMG OID642755332 
Productputative periplasmic protease 
Protein accessionYP_002126194 
Protein GI196156705 
COG category[O] Posttranslational modification, protein turnover, chaperones
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG0616] Periplasmic serine proteases (ClpP class) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000105224 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
TTGGAGTTTT TGTACGAATA CGGTTTGTTT GTTGCCAAAG CAGTAACACT CGTCGTTGCT 
TTTATCGTGG TTGTATCAAC CATTGTCGGT GTGGCAAGTA AGCAGAAGCA GGGGAAAGGC
CAACTTGAAA TCGTGTCTAT TTCTGAACAG TTAAAAGACA TAACGAATTA TGCAAAGCAG
GTACTTTTAG ATAAGAACGC GCTTAAAAAA CTGGCAAAGG AACAAAAGAA AGAAGCTAAG
GCAAAAAATA AAGAAAAGGG CGAAGACGCG AACAAGTCCC GCTTATACGT CCTCGACTTT
AAAGGCTCGA TGGACGCAAA CGAAGTTGAA CATTTACGTG AAGAAGTTAC CGCTATTCTT
TGTGTTGCCA ATAAAGAGGA CGAAGTGTTA GTTCGCCTTG AAAGTGGCGG CGGTGTGGTA
CACGGGTACG GACTTGCAGC ATCACAGCTT CAGCGTATTA AAGAAAAAGG CCTTAAGTTA
ACTATCGCTG TGGATAAAGT AGCGGCGAGT GGCGGCTATA TGATGGCGTG TGTTGCTGAT
AAATTACTTG CTTCTCAGTT TGCTTATATT GGCAGTATTG GCGTTTTGGC GCAGCTTCCT
AACTTCAATA AATTGCTCAA GAAGAATGAC ATTGAGTTTG AGCAACACAC CGCCGGTGAA
TTTAAACGAA CGCTGACGAT CTTTGGTGAA AATAACGACG AAGGTCGTGC CAAATTTAAA
GAAGAAATTG AAGAAATTCA TGTTCTTTTT AAAGACTTTG TTCAAAGTCA ACGCCCTGAT
ATGAACATTG ACAAAGTCGC TACAGGTGAG TACTGGCCTG GTATCAAAGC TAAGACGCTA
GGTTTGGTCG ACGAGATAAC CACATCAGAT GATTATATTC TCTCTCATTA TCCAGCACGG
GAAATATTTA GCGTTAAATA TTCAGTGAAG AAGAACGTCG CTGAAAAGCT AGGTATGTCA
GCAGCAAGCG TTGTTGAAAG GGTATTTATG AAATCAATGA GCAAAGCGCG TCACTGGTTT
TAA
 
Protein sequence
MEFLYEYGLF VAKAVTLVVA FIVVVSTIVG VASKQKQGKG QLEIVSISEQ LKDITNYAKQ 
VLLDKNALKK LAKEQKKEAK AKNKEKGEDA NKSRLYVLDF KGSMDANEVE HLREEVTAIL
CVANKEDEVL VRLESGGGVV HGYGLAASQL QRIKEKGLKL TIAVDKVAAS GGYMMACVAD
KLLASQFAYI GSIGVLAQLP NFNKLLKKND IEFEQHTAGE FKRTLTIFGE NNDEGRAKFK
EEIEEIHVLF KDFVQSQRPD MNIDKVATGE YWPGIKAKTL GLVDEITTSD DYILSHYPAR
EIFSVKYSVK KNVAEKLGMS AASVVERVFM KSMSKARHWF