| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | MADE_01765 |
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| Symbol | |
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| ID | 6775730 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Alteromonas macleodii 'Deep ecotype' |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011138 |
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| Strand | - |
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| Start bp | 1898365 |
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| End bp | 1899111 |
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| Gene Length | 747 bp |
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| Protein Length | 248 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 642755201 |
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| Product | RNA pseudouridine synthase family protein |
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| Protein accession | YP_002126063 |
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| Protein GI | 196156574 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
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| TIGRFAM ID | [TIGR00093] pseudouridine synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.00504065 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGTGACC AAGCGCCAAA ACGTTTAAAT AAATATATCA GTGACACCGG CCTGTGTTCG
CGACGTGAAG CTGATAAACT CATTGAGCAA AAGCGCGTTA GTGTAAACAA CCATCCTCCA
GAACTTGGCA CCAAGATAGG CCCAAATGAC ATCGTAAAAG TAGATGGTAA AATTGTTGGG
GCGGTGGCTA AAGACAAATC CGATCGGGTG TATATTGTTT ACAACAAACC CATAGGTATC
ACCTGCACCA CAGAGCGACA CGTTAAGGGA AACATCATTG ATGCCATAGG TCACAAAGCG
CGTATTTTCC CTGTTGGGCG CCTAGATAAG CCATCAGAAG GGCTTATTAT CTTGACCAGT
GACGGTGATA TAGTAAACAA GATATTGCGC GCTGAAAATG CTCACGATAA AGAGTACGAA
GTCACGGTTA ACCAGCCTAT CAGCGAGCGC TTCGTTAAAC GCATGGCCCG TGGTGTCCCT
ATCTTAGGAA CAGTAACTAA GCCTTGTGTT GTAAAGCCCA CAGGTAAAAA TACGTTTACT
ATTATCCTAA CCCAAGGGCT CAATCGCCAA ATCCGCAGAA TGTGTGAATT TCTCGGGTAT
GAGGTGACTA AATTAAAGCG CACACGAATT ATGCACCTTG AGCTCAAGGC CCTGAAACCG
GGACAGTGGC GTAACCTCAC CCAACACGAG CTAACCACGT TGCAAAATGC GGTTAAAGCA
TCGAGTAAAA CTGCGCCCTC AAACTAA
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| Protein sequence | MSDQAPKRLN KYISDTGLCS RREADKLIEQ KRVSVNNHPP ELGTKIGPND IVKVDGKIVG
AVAKDKSDRV YIVYNKPIGI TCTTERHVKG NIIDAIGHKA RIFPVGRLDK PSEGLIILTS
DGDIVNKILR AENAHDKEYE VTVNQPISER FVKRMARGVP ILGTVTKPCV VKPTGKNTFT
IILTQGLNRQ IRRMCEFLGY EVTKLKRTRI MHLELKALKP GQWRNLTQHE LTTLQNAVKA
SSKTAPSN
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