| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | MADE_01755 |
|---|
| Symbol | |
|---|
| ID | 6775423 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Alteromonas macleodii 'Deep ecotype' |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011138 |
|---|
| Strand | + |
|---|
| Start bp | 1885532 |
|---|
| End bp | 1888867 |
|---|
| Gene Length | 3336 bp |
|---|
| Protein Length | 1111 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 642755191 |
|---|
| Product | putative two-component member protein |
|---|
| Protein accession | YP_002126053 |
|---|
| Protein GI | 196156564 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG3300] MHYT domain (predicted integral membrane sensor domain) |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATATCTC GCTTTTTTAC GTTTGAAGAA AGCGCCACTT TGCTAGAGGG CGCCTACCAC
TTTCCCCTCG TAGTATTGTC TCTTTTAGTC GCAATATTTG CATCATTTAT GGCGTTTAAT
GTCGCAGGAC AAGCTGCCGT TACAACCGAT CACCTTCGCC GGAATACGCT ATTGGGAACG
GGCAGTATTG CGCTTGGTGG CGGCATTTGG TCTATGCATT TTCTGGGCAT GACCGCGTTT
GATTTGTGCG TATCTGTTGA ATATGACCCC CTTATAACGG GGCTGTCGGC CCTGCCGGGC
ATTGCGGCGG CATGGGTAGC GCTGAATTTA CTAATTAAAA CCCGCATCAG TGTGAGTGAA
GTTATTCTTG GCGGTGTATT GGTAGGCGCA GGTATTGGTA CTATGCACTA CAGTGGTATG
GCGGCAATGG AAATGGCACC TTTGCTGCGA TACAACTTAC CTATGTTCGC GCTGTCCATT
ATAGTAGCAG TACTTCTTGC CATGCTTTCA CTTTGGATTA AGTTTGGAAT AAGAGCGGCA
ACGAAGTCTA AAAAGCTTTT GGGTAAACAC GTTTTACTAG CTAGTGTAGT TATGGGGTGT
GCTATTGCAG GAATGCATTA TACCGGCATG GCCGCAGCGC GTTTTGTTTT GCCGCCTGGT
ATGGAAACCT CTGCTCAATC ATCAAATATC GCGGTCTTTT TGGCCGTATC AATAGCAATA
GTTACACTTA TACTTATTAC TATGGTGTTG GGTATCAGCC TGTTATTCAA ATACCGTGAC
GTTATGGTAC GGGCAATCGA AAGCGAACGA ATTCAAAGAG CAATAACCGA CACGGCAGTA
GATGCCATCA TGACTGTCAA TGATAAAGGC ATCATAAAAA CGGCTAACCC TGCCGTAGAA
CATATTTATG GTTATAAGCC TGATGAACTC ATTGGTCTTC ACGCGTCTGA AATTGTTCCT
CATGAAAGGC GCCACCTTTA CGACGATGAC TTTTTTAGTC AACGGGTTGT GCCCACTGAG
CAAATTATTG GTACTGGACG TGAAGTAGAA ATATTAAGAA AAGGTGGTGA AAAGATACCG
GTTCGCCTCG GTGTGGGGTA TACGAAAATT GATGGAAAGC CGGTTTTTGT TTCGTTTGCT
TCCGATTTGC GCAAACGTAA AGAAATAGAA GATGCCCTTC GTGAAAGTGA GGCTAAGTTT
AGAAGTTTGA TTTCTAATAT TCCGGGAGTA GCGTATCGCT GTCTGAATAT GCCTGGCTGG
CCAATGGTAT TTATTAGTGA TGCGGTTACA GAAGTAACGG GTTATTCACC CGAAGATTTT
GTATTGCCAG ACCCAAAGCG TTCTTTTAGT GACCTTTATC ATCCTGACGA TGTGGAAAGG
CTTTGTAATG TAAACAGCGA CGGGGGCCCG TTCTCCTATG AATATCGCAT TGTTGCAAAA
TCAGGCGAAG TTAAATGGGT AACGGAGCAC GGCGTTCATG TTAAAGATGA AGATGGCAAC
GTGCTTTACG TAGATGGGTT TATCTCTGAT ATCACTCAAA GACGTGTAAT GGAAGATGAG
CTTAAAGCCG CGAAAGAAAA GGCAGAGCAG GCTGCCGCAG CCCGTACGGC CTTCTTAGCA
AATATGAGCC ATGAAATTCG TACACCCATG AACGCGATTA TTGGCTTTAG CGACCTCATG
TTAGGCGAGG CCTTACGAGA CGAACAAAAA TCTCATCTCA CTACAATTAA TCGTTCGGCG
CGCTCCCTGC TTCACCTACT CAATGATATT TTGGACAGTG CTAAGTTAGA TAAAGGAAAG
CTTGATCTAG ACTATCGCGA CTTCCTTATA CGTGAAGAAT TAGACCTTGT TGTATCGACC
TTTTGGTTAG AAGCTAAACG CAAAAAGGTC GACCTAGTAC TTAACGTGGA TGCGTCGGTT
GCCGATGGTT ACCGAGGTGT ACCAGAGCGC ATGCGGCAAG TACTTAACAA CCTGATTGGC
AATGCTGTGA AGTTTACGCA CGAAGGCAAA GTAGAAATAG CGGTAAGAAG TGAAGGAGAG
CTTGTTTACT TTGATGTTTC AGATACCGGC ATTGGGATGA CGAAAGCGCA GTTGGACAAT
GTATTCGACC CGTTCTCTCA AGCCGATGCG TCAATGAGTA GAAAGTATGG GGGGACCGGG
TTAGGTACCA CGATTTCGAA ACAGCTGGTA GAGCTGATGG GCGGCAATAT TTGTGCAACC
AGTGAAGAAG GGAAAGGGAC GACCTTTACC TTTCGGCTAC CGTTAGAAGT TGTTGCGTTA
GATGAAACGA GCAAGGCTGA CGCGGATGCA AAAATAACGC ATATCGAGTC TACACTGAAT
ATTCTGGTAG TGGATGATGT TCAGCAAAAT ATTGAGTTAC TTTCATTACT GCTTAAACGC
TCAGGGCACA AGGTAGAGAC GGCAACAGAC GGTTTGATCG CACTTAAAAA AATGCGCGCA
CAGTCTTTTG ATGTGGTGTT GATGGATTTA CAAATGCCTA ACCTCGATGG TTTAGAGGCA
GCTAAACAAC GTCGACTTTA TGAAAAAGAT CAGGGATTAC CTGCAACGCC TATCATCGCA
CTTACTGCAA GTGTGCTCGT TCAAGATAAG TATGAGGCAG AGCAAGCCGG TATGGAAGGA
TTTGCTAATA AGCCTGTGGA TTTCTCCTTA TTAATGGAAG AGATTGTGCG GGTACTTAAC
CTGGAAACTG AGCAGGTGAA AGTATCAGAA AACGCGCTGC CAACGCAGCA TCGCGCATCT
ACACTCAGTG TTGAAAAGCA TATTTTAGAT ATCAATAAGG CCATTGATTT GTGGGGCAAC
GAAGATACGG TGCTCCAAGA GGTCGATAAA TTTACCTCTT CTTGTCGAGA TAAAATAGAT
GCGCTGATGA GTGCTACAAT TAGGGAAGAT TACAAAGCGG TAGCAGCTTT AGCACATGGA
TTGAAAGGCA CGTCTGGGAA TTTATGTTTA ACCACGTTTT TCCGCACCAC GCGAGATATA
GAGTCTCAAG CGCTGAAGTC ACACGTTGAT ATAGAAAACA TTAATGTATT AAGAGACGCA
TTAGATAAAA TTGAATTAAT GTTGAGCGAG TCGCCCTTGT ACGCTGAGGA TGCTATAAAT
GAAAGCATCG ACAACGAGCT GTTACTTAGC CATTTAATGT CGCTGCTTGA AAGCGTTGAC
AAAAATATGG TGGATGAAGA AGAGTTGGCT TTCCTGCGTG AAGTAGGGTG TTCTAGTCAT
AAAGAACAAA TAACGCAAAT CATATTAGAT ATAGACGATT TCGAATTTGA ACTCGCGCAT
GAACGGATTT CGTTAATGTT AGAAGAGTTA AAGTAG
|
|---|
| Protein sequence | MISRFFTFEE SATLLEGAYH FPLVVLSLLV AIFASFMAFN VAGQAAVTTD HLRRNTLLGT
GSIALGGGIW SMHFLGMTAF DLCVSVEYDP LITGLSALPG IAAAWVALNL LIKTRISVSE
VILGGVLVGA GIGTMHYSGM AAMEMAPLLR YNLPMFALSI IVAVLLAMLS LWIKFGIRAA
TKSKKLLGKH VLLASVVMGC AIAGMHYTGM AAARFVLPPG METSAQSSNI AVFLAVSIAI
VTLILITMVL GISLLFKYRD VMVRAIESER IQRAITDTAV DAIMTVNDKG IIKTANPAVE
HIYGYKPDEL IGLHASEIVP HERRHLYDDD FFSQRVVPTE QIIGTGREVE ILRKGGEKIP
VRLGVGYTKI DGKPVFVSFA SDLRKRKEIE DALRESEAKF RSLISNIPGV AYRCLNMPGW
PMVFISDAVT EVTGYSPEDF VLPDPKRSFS DLYHPDDVER LCNVNSDGGP FSYEYRIVAK
SGEVKWVTEH GVHVKDEDGN VLYVDGFISD ITQRRVMEDE LKAAKEKAEQ AAAARTAFLA
NMSHEIRTPM NAIIGFSDLM LGEALRDEQK SHLTTINRSA RSLLHLLNDI LDSAKLDKGK
LDLDYRDFLI REELDLVVST FWLEAKRKKV DLVLNVDASV ADGYRGVPER MRQVLNNLIG
NAVKFTHEGK VEIAVRSEGE LVYFDVSDTG IGMTKAQLDN VFDPFSQADA SMSRKYGGTG
LGTTISKQLV ELMGGNICAT SEEGKGTTFT FRLPLEVVAL DETSKADADA KITHIESTLN
ILVVDDVQQN IELLSLLLKR SGHKVETATD GLIALKKMRA QSFDVVLMDL QMPNLDGLEA
AKQRRLYEKD QGLPATPIIA LTASVLVQDK YEAEQAGMEG FANKPVDFSL LMEEIVRVLN
LETEQVKVSE NALPTQHRAS TLSVEKHILD INKAIDLWGN EDTVLQEVDK FTSSCRDKID
ALMSATIRED YKAVAALAHG LKGTSGNLCL TTFFRTTRDI ESQALKSHVD IENINVLRDA
LDKIELMLSE SPLYAEDAIN ESIDNELLLS HLMSLLESVD KNMVDEEELA FLREVGCSSH
KEQITQIILD IDDFEFELAH ERISLMLEEL K
|
|---|
| |