| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | MADE_01730 |
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| Symbol | |
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| ID | 6775499 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Alteromonas macleodii 'Deep ecotype' |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011138 |
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| Strand | + |
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| Start bp | 1855084 |
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| End bp | 1856919 |
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| Gene Length | 1836 bp |
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| Protein Length | 611 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 642755163 |
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| Product | RNA polymerase sigma factor |
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| Protein accession | YP_002126028 |
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| Protein GI | 196156539 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.0157743 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCGCAAA GCAAGCAGTC TCAGATTAAA CTCCTGATTG CAAAAGGTAA AGAGCAAGGT
TACTTAACCT TTGCAGAAGT TAACGACCAC CTGCCGCAAG ATATTGTCGA TTCTGATCAA
ATCGAAGACA TAATCCGCAT GATTAACGAC ATGGGAATTC AAGTTTCTGA ATCAGCTCCT
GATGCAGATG AACTTCTCAT GCAAGAAGCG AATGCTGACG AAGATGCCGC GGAAGCGGCG
GCGCAAGCAC TGGCTACCGT AGAAAGTGAA ATTGGCCGTA CAACTGACCC AGTTCGCATG
TATATGCGTG AAATGGGTAC TGTTGAACTT CTTACTCGTG AAGGCGAAAT TGAAATCGCT
AAGCGAATTG AAGACGGTAT AAACCAAGTA CAGTGTTCGG TTGCTGAATA CCCAGAAGCG
ATCACTTACC TGTTAGATCA GTGGGACCTT TACGAAGCCG AAGAAATTCG CCTAAGCGAT
ATTATCTCGG GCTTTGTTGA TCCTAACGAT GATCAAGATC TCGCACCAAC AGCAACCCAC
GTGGGCTCTG AGTTATCTGA AGAAGAATTA GATGACGAAG ATGGCGACGA TGATGAAGAT
GAAGACGAAG AAGAAGACGA TAGCGGCGTA GACCCAGAGC TAGCGCGCGA GCGCTTCTCA
GAGCTTCGTG AGCAGTACAT CAAAACTCGT GAAGTTATCG AGAAGAAAGG CCGCTCTCAC
GCCGATTCCC GTACCCAAAT CAACGCTTTA AGCGACGTTT TCAAAGAGTT CCGCTTAGTT
CCTAAGCAGT TCGACCGCAT GGTTAAGAAC ATGCGTGCGA TGATGGACAA GGTGCGTATC
CAAGAACGTC TTGTTATGAA GTTCTGCGTT GTTAATGCAA AAATGCCTAA GAAAGACTTT
ATCAAAGCAT TTGCGGGCAA TGAAACCTCT ACTGCATGGT TGCATGAAGC TGTTAAATCA
GGTGCGCCTT ATGCCGCTGA TCTTGCAGTT AACCAAGAAG AGATTGAACG CTGCATTAGT
AAGATGAACC AAGTAGAGCA AGAAACTGGC TTGGTTATCG CAGATATTAA AGACATTAAC
CGTCGTATGT CGATTGGTGA AGCGAAAGCC CGTCGCGCGA AAAAAGAAAT GGTTGAAGCC
AACCTTCGTC TTGTAATCTC AATTGCGAAG AAGTACACCA ACCGCGGTCT GCAGTTCCTT
GACCTTATTC AAGAGGGTAA CATTGGCCTA ATGAAGGCGG TGGACAAGTT TGAATATCGT
CGTGGTTATA AGTTCTCGAC GTATGCAACA TGGTGGATTC GTCAGGCTAT TACTCGCTCG
ATTGCAGACC AGGCGCGTAC AATTCGTATT CCTGTGCACA TGATTGAGAC GATTAACAAG
CTAAACCGTA TCTCTCGTCA AATGCTTCAG GAAATGGGTC GTGAACCTAC ACCTGAAGAG
TTGTCCGAGC GCATGCTAAT GCCTGAAGAC AAAATTCGTA AGGTACTTAA GATTGCTAAA
GAGCCAATCT CGATGGAAAC CCCTATCGGC GATGATGAAG ATTCACATCT TGGCGACTTT
ATCGAGGACA GCACTATTAT TCAGCCCCTC GATTCAGCAA CTGGCGGTAG CTTAAAAGGC
GCAACACAAG AAGTTTTGGC AGGTCTAACA GCCCGTGAAG CAAAAGTACT GCGTATGCGT
TTCGGTATCG ATATGAATAC CGACCACACG CTTGAAGAAG TAGGCAAACA GTTTGACGTT
ACCCGTGAGC GTATTCGTCA GATTGAAGCT AAAGCACTCC GCAAGCTTCG CCACCCTAGC
CGTTCTGAGC AGCTACGCAG TTTCTTAGAC GAATAG
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| Protein sequence | MAQSKQSQIK LLIAKGKEQG YLTFAEVNDH LPQDIVDSDQ IEDIIRMIND MGIQVSESAP
DADELLMQEA NADEDAAEAA AQALATVESE IGRTTDPVRM YMREMGTVEL LTREGEIEIA
KRIEDGINQV QCSVAEYPEA ITYLLDQWDL YEAEEIRLSD IISGFVDPND DQDLAPTATH
VGSELSEEEL DDEDGDDDED EDEEEDDSGV DPELARERFS ELREQYIKTR EVIEKKGRSH
ADSRTQINAL SDVFKEFRLV PKQFDRMVKN MRAMMDKVRI QERLVMKFCV VNAKMPKKDF
IKAFAGNETS TAWLHEAVKS GAPYAADLAV NQEEIERCIS KMNQVEQETG LVIADIKDIN
RRMSIGEAKA RRAKKEMVEA NLRLVISIAK KYTNRGLQFL DLIQEGNIGL MKAVDKFEYR
RGYKFSTYAT WWIRQAITRS IADQARTIRI PVHMIETINK LNRISRQMLQ EMGREPTPEE
LSERMLMPED KIRKVLKIAK EPISMETPIG DDEDSHLGDF IEDSTIIQPL DSATGGSLKG
ATQEVLAGLT AREAKVLRMR FGIDMNTDHT LEEVGKQFDV TRERIRQIEA KALRKLRHPS
RSEQLRSFLD E
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