| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | MADE_01588 |
|---|
| Symbol | |
|---|
| ID | 6775230 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Alteromonas macleodii 'Deep ecotype' |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011138 |
|---|
| Strand | - |
|---|
| Start bp | 1703902 |
|---|
| End bp | 1705296 |
|---|
| Gene Length | 1395 bp |
|---|
| Protein Length | 464 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 642755020 |
|---|
| Product | two-component system, response regulator |
|---|
| Protein accession | YP_002125886 |
|---|
| Protein GI | 196156397 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
|---|
| TIGRFAM ID | [TIGR01818] nitrogen regulation protein NR(I) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.396226 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTGGATTG TCGATGACGA CAGTTCTATT CGTTGGGTGC TGCAAAAGGC CTTACAAGCA
GCAGATATAA GCTGCTTAAG TTTTGAAAAC CCTGAAGATT TATTGCTTCA ACTTCAAAGC
GGTCAAGCAC CTGAAGTCAT CATTTCAGAT ATTAGAATGC CACAAATGGA CGGCATGGCA
TTACTGAACG AAGTGCATGC TTCGCACCCC ATGCTGCCCG TTATCATTAT GACGGCGCAT
TCGGATTTAG ATAGCGCGGT TAACGCCTAT CAAAAAGGCG CATTTGAATA TTTGCCAAAG
CCATTTGATA TAGACGAGGC GGTAACGTTA ACCCAGCGTG CGCTTGCTCA TTCCAGAGAG
CAATCCACGG TTTCCAAAGC GCAAGTCGAA GACGTGGTAA CGGAAATTAT TGGCGAAGCC
CCTGCCATGC AGGAAGTGTT TCGTGCCATA GGTCGCCTGT CTCGCTCTTC AATCAGTGTG
CTTATCAACG GTCAATCGGG TACGGGTAAA GAACTCGTCG CGCACGCTCT TCACAGGCAC
AGCCCCAGAG CCAGCAAACC CTTCATCGCC CTTAACATGG CCGCCATTCC AGCAGACCTT
GTAGAGTCTG AGTTATTTGG CCACGAAAAA GGCGCGTTTA CCGGCGCACA AGCCGCCCGC
CAAGGCCGCT TTGAACAAGC CGACGGCGGT ACATTATTTT TAGACGAAAT TGGTGATATG
CCTCTTGATG TGCAAACCCG CCTTTTGCGC GTGCTAGCCG ATGGGCAGTT TTATCGCGTG
GGTGGTCACC AGTCAGTAAG CGTGGACGTG CGCATCATCG CCGCCACACA CCAAAACTTA
GAACAAAGGG TTGCTGAAGG TAAGTTCAGG GAAGATTTAT TTCACCGCCT AAATGTTATT
CGCGTGCATC TTCCATCACT CAACGAACGC CGCGAAGATA TTCCGCTGTT AACACGCCAC
TTCCTACGCC GCGCTGCCAA AGAACTTGAT GTTGAAGCCA AGAGCATATC GAAAGACGCT
GAGCGCGTAA TGTCGCAGCT TCCCTGGCCT GGCAACGTAA GGCAACTAGA AAACGTATGC
CGCTGGCTAA CGGTTATGGC AAGTGGGCAA GAGGTCCTTC CCAGCGATCT ACCTCCTGAA
ATCCACAGCG ATAGTTCGAT TGAAAAGCCA AGTGCAGAAT CAGGTGACTG GCCAGACTTA
TTAGCAAGTT GGACCGACAA ACAGCTGCGC GACGGCCATC ACAACATCTT AAACGATGCC
ATGCTTACCT TTGAGCGCGT GATGCTTGAG CGCGCGCTAC AGCATACCCA CGGCCATAAA
CAAGACGCTG CTAAGCGGTT AGGTTGGGGG CGCAATACAT TAACCAGAAA GCTTAAGGAG
CTTGGCGTTA ATTAA
|
|---|
| Protein sequence | MWIVDDDSSI RWVLQKALQA ADISCLSFEN PEDLLLQLQS GQAPEVIISD IRMPQMDGMA
LLNEVHASHP MLPVIIMTAH SDLDSAVNAY QKGAFEYLPK PFDIDEAVTL TQRALAHSRE
QSTVSKAQVE DVVTEIIGEA PAMQEVFRAI GRLSRSSISV LINGQSGTGK ELVAHALHRH
SPRASKPFIA LNMAAIPADL VESELFGHEK GAFTGAQAAR QGRFEQADGG TLFLDEIGDM
PLDVQTRLLR VLADGQFYRV GGHQSVSVDV RIIAATHQNL EQRVAEGKFR EDLFHRLNVI
RVHLPSLNER REDIPLLTRH FLRRAAKELD VEAKSISKDA ERVMSQLPWP GNVRQLENVC
RWLTVMASGQ EVLPSDLPPE IHSDSSIEKP SAESGDWPDL LASWTDKQLR DGHHNILNDA
MLTFERVMLE RALQHTHGHK QDAAKRLGWG RNTLTRKLKE LGVN
|
|---|
| |